Using cascading Bloom filters to improve the memory usage for de Brujin graphs

Por Salikhov, Kamil, Sacomoto, Gustavo, Kucherov, Gregory
Publicado em 2014

A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs

Por Sacomoto, Gustavo, Lacroix, Vincent, Sagot, Marie-France
Publicado no Algorithms Mol Biol (2015)

Lossless filter for multiple repeats with bounded edit distance

Por Peterlongo, Pierre, Sacomoto, Gustavo Akio Tominaga, do Lago, Alair Pereira, Pisanti, Nadia, Sagot, Marie-France
Publicado em 2009

KISSPLICE: de-novo calling alternative splicing events from RNA-seq data

Por Sacomoto, Gustavo AT, Kielbassa, Janice, Chikhi, Rayan, Uricaru, Raluca, Antoniou, Pavlos, Sagot, Marie-France, Peterlongo, Pierre, Lacroix, Vincent
Publicado em 2012

Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads

Por Lima, Leandro, Sinaimeri, Blerina, Sacomoto, Gustavo, Lopez-Maestre, Helene, Marchet, Camille, Miele, Vincent, Sagot, Marie-France, Lacroix, Vincent
Publicado no Algorithms Mol Biol (2017)

Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data

Por Benoit-Pilven, Clara, Marchet, Camille, Chautard, Emilie, Lima, Leandro, Lambert, Marie-Pierre, Sacomoto, Gustavo, Rey, Amandine, Cologne, Audric, Terrone, Sophie, Dulaurier, Louis, Claude, Jean-Baptiste, Bourgeois, Cyril F., Auboeuf, Didier, Lacroix, Vincent
Publicado no Sci Rep (2018)

Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

Por Le Bras, Yvan, Collin, Olivier, Monjeaud, Cyril, Lacroix, Vincent, Rivals, Éric, Lemaitre, Claire, Miele, Vincent, Sacomoto, Gustavo, Marchet, Camille, Cazaux, Bastien, Zine El Aabidine, Amal, Salmela, Leena, Alves-Carvalho, Susete, Andrieux, Alexan, Uricaru, Raluca, Peterlongo, Pierre
Publicado no Gigascience (2016)