KISSPLICE: de-novo calling alternative splicing events from RNA-seq data

BACKGROUND: In this paper, we address the problem of identifying and quantifying polymorphisms in RNA-seq data when no reference genome is available, without assembling the full transcripts. Based on the fundamental idea that each polymorphism corresponds to a recognisable pattern in a De Bruijn gra...

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Bibliografiske detaljer
Main Authors: Sacomoto, Gustavo AT, Kielbassa, Janice, Chikhi, Rayan, Uricaru, Raluca, Antoniou, Pavlos, Sagot, Marie-France, Peterlongo, Pierre, Lacroix, Vincent
Format: Artigo
Sprog:Inglês
Udgivet: BioMed Central 2012
Fag:
Proceedings
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC3358658/
https://ncbi.nlm.nih.gov/pubmed/22537044
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2105-13-S6-S5
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