SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence

SNPs (Single Nucleotide Polymorphisms) are genetic markers whose precise identification is a prerequisite for association studies. Methods to identify them are currently well developed for model species, but rely on the availability of a (good) reference genome, and therefore cannot be applied to no...

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Detalhes bibliográficos
Publicado no:Nucleic Acids Res
Main Authors: Lopez-Maestre, Hélène, Brinza, Lilia, Marchet, Camille, Kielbassa, Janice, Bastien, Sylvère, Boutigny, Mathilde, Monnin, David, Filali, Adil El, Carareto, Claudia Marcia, Vieira, Cristina, Picard, Franck, Kremer, Natacha, Vavre, Fabrice, Sagot, Marie-France, Lacroix, Vincent
Formato: Artigo
Idioma:Inglês
Publicado em: Oxford University Press 2016
Assuntos:
Methods Online
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC5100560/
https://ncbi.nlm.nih.gov/pubmed/27458203
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gkw655
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