L1000FWD: fireworks visualization of drug-induced transcriptomic signatures

nork Wang, Zichen, Lachmann, Alexander, Keenan, Alexandra B, Ma’ayan, Avi
Argitaratua izan da Bioinformatics (2018)

Leishmania infantum chagasi: A genome-based approach to identification of excreted/secreted proteins

nork DebRoy, Sruti, Keenan, Alexandra B., Ueno, Norikiyo, Jeronimo, Selma M. B., Donelson, John E., Wilson, Mary E.
Argitaratua 2010

Geneshot: search engine for ranking genes from arbitrary text queries

nork Lachmann, Alexander, Schilder, Brian M, Wojciechowicz, Megan L, Torre, Denis, Kuleshov, Maxim V, Keenan, Alexandra B, Ma’ayan, Avi
Argitaratua izan da Nucleic Acids Res (2019)

Massive mining of publicly available RNA-seq data from human and mouse

nork Lachmann, Alexander, Torre, Denis, Keenan, Alexandra B., Jagodnik, Kathleen M., Lee, Hoyjin J., Wang, Lily, Silverstein, Moshe C., Ma’ayan, Avi
Argitaratua izan da Nat Commun (2018)

modEnrichr: a suite of gene set enrichment analysis tools for model organisms

nork Kuleshov, Maxim V, Diaz, Jennifer E L, Flamholz, Zachary N, Keenan, Alexandra B, Lachmann, Alexander, Wojciechowicz, Megan L, Cagan, Ross L, Ma’ayan, Avi
Argitaratua izan da Nucleic Acids Res (2019)

ChEA3: transcription factor enrichment analysis by orthogonal omics integration

nork Keenan, Alexandra B, Torre, Denis, Lachmann, Alexander, Leong, Ariel K, Wojciechowicz, Megan L, Utti, Vivian, Jagodnik, Kathleen M, Kropiwnicki, Eryk, Wang, Zichen, Ma’ayan, Avi
Argitaratua izan da Nucleic Acids Res (2019)

eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks

nork Clarke, Daniel J B, Kuleshov, Maxim V, Schilder, Brian M, Torre, Denis, Duffy, Mary E, Keenan, Alexandra B, Lachmann, Alexander, Feldmann, Axel S, Gundersen, Gregory W, Silverstein, Moshe C, Wang, Zichen, Ma’ayan, Avi
Argitaratua izan da Nucleic Acids Res (2018)

The Library of Integrated Network-based Cellular Signatures (LINCS) NIH Program: System-level Cataloging of Human Cells Response to Perturbations

nork Keenan, Alexandra B., Jenkins, Sherry L., Jagodnik, Kathleen M., Koplev, Simon, He, Edward, Torre, Denis, Wang, Zichen, Dohlman, Anders B., Silverstein, Moshe C., Lachmann, Alexander, Kuleshov, Maxim V., Ma’ayan, Avi, Stathias, Vasileios, Terryn, Raymond, Cooper, Daniel, Forlin, Michele, Koleti, Amar, Vidovic, Dusica, Chung, Caty, Schürer, Stephan C., Vasiliauskas, Jouzas, Pilarczyk, Marcin, Shamsaei, Behrouz, Fazel, Mehdi, Ren, Yan, Niu, Wen, Clark, Nicholas A., White, Shana, Mahi, Naim, Zhang, Lixia, Kouril, Michal, Reichard, John F., Sivaganesan, Siva, Medvedovic, Mario, Meller, Jaroslaw, Koch, Rick J., Birtwistle, Marc R., Iyengar, Ravi, Sobie, Eric A., Azeloglu, Evren, Kaye, Julia, Osterloh, Jeannette, Haston, Kelly, Kalra, Jaslin, Finkbiener, Steve M., Li, Jonathan, Milani, Pamela, Adam, Miriam, Escalante, Renan, Sachs, Karen, Lenail, Alex, Ramamoorthy, Divya, Fraenkel, Ernest, Daigle, Gavin, Hussain, Uzma, Coye, Alyssa, Rothstein, Jeffrey, Sareen, Dhruv, Ornelas, Loren, Banuelos, Maria, Mandefro, Berhan, Ho, Ritchie, Svendsen, Clive N., Lim, Ryan, Stocksdale, Jennifer, Casale, Malcolm, Thompson, Terri, Wu, Jenny, Thompson, Leslie M., Dardov, Victoria, Venkatraman, Vidya, Matlock, Andrea, Van Eyk, Jenny, Jaffe, Jacob D., Papanastasiou, Malvina, Subramanian, Aravind, Golub, Todd R., Erickson, Sean D., Fallahi-Sichani, Mohammad, Hafner, Marc, Gray, Nathanael S., Lin, Jia-Ren, Mills, Caitlin E., Muhlich, Jeremy L., Niepel, Mario, Shamu, Caroline E., Williams, Elizabeth H., Wrobel, David, Sorger, Peter K., Heiser, Laura M., Gray, Joe W., Korkola, James E., Mills, Gordon B., LaBarge, Mark, Feiler, Heidi S., Dane, Mark A., Bucher, Elmar, Nederlof, Michel, Sudar, Damir, Gross, Sean, Kilburn, David F., Smith, Rebecca, Devlin, Kaylyn, Margolis, Ron, Derr, Leslie, Lee, Albert, Pilai, Ajay
Argitaratua izan da Cell Syst (2017)