Trimming of mammalian transcriptional networks using network component analysis

Por Liao James C, Hyduke Daniel R, Tran Linh M
Publicado em 2010-10-01

Trimming of mammalian transcriptional networks using network component analysis

Por Tran, Linh M, Hyduke, Daniel R, Liao, James C
Publicado em 2010

Comparison of Mouse Urinary Metabolic Profiles after Exposure to the Inflammatory Stressors γ Radiation and Lipopolysaccharide

Por Laiakis, Evagelia C., Hyduke, Daniel R., Fornace, Albert J.
Publicado em 2011

Analysis of omics data with genome-scale models of metabolism

Por Hyduke, Daniel R., Lewis, Nathan E., Palsson, Bernhard Ø.
Publicado em 2012

COBRApy: COnstraints-Based Reconstruction and Analysis for Python

Por Ebrahim, Ali, Lerman, Joshua A, Palsson, Bernhard O, Hyduke, Daniel R
Publicado em 2013

Identifying radiation exposure biomarkers from mouse blood transcriptome

Por Hyduke, Daniel R., Laiakis, Evagelia C., Li, Heng-Hong, Fornace, Albert J.
Publicado em 2013

Nitric oxide reaction with red blood cells and hemoglobin under heterogeneous conditions

Por Han, Tae H., Hyduke, Daniel R., Vaughn, Mark W., Fukuto, Jon M., Liao, James C.
Publicado em 2002

Integrated network analysis identifies nitric oxide response networks and dihydroxyacid dehydratase as a crucial target in Escherichia coli

Por Hyduke, Daniel R., Jarboe, Laura R., Tran, Linh M., Chou, Katherine J. Y., Liao, James C.
Publicado em 2007

Exposure to ionizing radiation induced persistent gene expression changes in mouse mammary gland

Por Datta, Kamal, Hyduke, Daniel R, Suman, Shubhankar, Moon, Bo-Hyun, Johnson, Michael D, Fornace, Albert J
Publicado em 2012

Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction

Por O’Brien, Edward J, Lerman, Joshua A, Chang, Roger L, Hyduke, Daniel R, Palsson, Bernhard Ø
Publicado em 2013

GIM(3)E: condition-specific models of cellular metabolism developed from metabolomics and expression data

Por Schmidt, Brian J., Ebrahim, Ali, Metz, Thomas O., Adkins, Joshua N., Palsson, Bernhard Ø., Hyduke, Daniel R.
Publicado em 2013

A Systems Approach to Predict Oncometabolites via Context-Specific Genome-Scale Metabolic Networks

Por Nam, Hojung, Campodonico, Miguel, Bordbar, Aarash, Hyduke, Daniel R., Kim, Sangwoo, Zielinski, Daniel C., Palsson, Bernhard O.
Publicado em 2014

Regulation of nitric oxide consumption by hypoxic red blood cells

Por Han, Tae H., Qamirani, Erion, Nelson, Allyson G., Hyduke, Daniel R., Chaudhuri, Gautam, Kuo, Lih, Liao, James C.
Publicado em 2003

Development of a toxicogenomics signature for genotoxicity using a dose-optimization and informatics strategy in human cells

Por Li, Heng-Hong, Hyduke, Daniel R., Chen, Renxiang, Heard, Pamela, Yauk, Carole L., Aubrecht, Jiri, Fornace, Albert J.
Publicado no Environ Mol Mutagen (2015)

Nitric oxide is consumed, rather than conserved, by reaction with oxyhemoglobin under physiological conditions

Por Joshi, Mahesh S., Ferguson, T. Bruce, Han, Tae H., Hyduke, Daniel R., Liao, James C., Rassaf, Tienush, Bryan, Nathan, Feelisch, Martin, Lancaster, Jack R.
Publicado em 2002

Technologies and Approaches to Elucidate and Model the Virulence Program of Salmonella

Por McDermott, Jason E., Yoon, Hyunjin, Nakayasu, Ernesto S., Metz, Thomas O., Hyduke, Daniel R., Kidwai, Afshan S., Palsson, Bernhard O., Adkins, Joshua N., Heffron, Fred
Publicado em 2011

An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92

Por Charusanti, Pep, Chauhan, Sadhana, McAteer, Kathleen, Lerman, Joshua A, Hyduke, Daniel R, Motin, Vladimir L, Ansong, Charles, Adkins, Joshua N, Palsson, Bernhard O
Publicado em 2011

Modulation of nitric oxide bioavailability by erythrocytes

Por Huang, Kuang-Tse, Han, Tae H., Hyduke, Daniel R., Vaughn, Mark W., Van Herle, Helga, Hein, Travis W., Zhang, Cuihua, Kuo, Lih, Liao, James C.
Publicado em 2001

Integration of metabolic activation with a predictive toxicogenomics signature to classify genotoxic versus nongenotoxic chemicals in human TK6 cells

Por Buick, Julie K., Moffat, Ivy, Williams, Andrew, Swartz, Carol D., Recio, Leslie, Hyduke, Daniel R., Li, Heng‐Hong, Fornace, Albert J., Aubrecht, Jiri, Yauk, Carole L.
Publicado no Environ Mol Mutagen (2015)

A predictive toxicogenomics signature to classify genotoxic versus non-genotoxic chemicals in human TK6 cells

Por Williams, Andrew, Buick, Julie K., Moffat, Ivy, Swartz, Carol D., Recio, Leslie, Hyduke, Daniel R., Li, Heng-Hong, Fornace, Albert J., Aubrecht, Jiri, Yauk, Carole L.
Publicado no Data Brief (2015)