Computationally Efficient Composite Likelihood Statistics for Demographic Inference

af Coffman, Alec J., Hsieh, Ping Hsun, Gravel, Simon, Gutenkunst, Ryan N.
Udgivet i Mol Biol Evol (2016)

Triallelic Population Genomics for Inferring Correlated Fitness Effects of Same Site Nonsynonymous Mutations

af Ragsdale, Aaron P., Coffman, Alec J., Hsieh, PingHsun, Struck, Travis J., Gutenkunst, Ryan N.
Udgivet i Genetics (2016)

Assessing models of speciation under different biogeographic scenarios; an empirical study using multi‐locus and RNA‐seq analyses

af Edwards, Taylor, Tollis, Marc, Hsieh, PingHsun, Gutenkunst, Ryan N., Liu, Zhen, Kusumi, Kenro, Culver, Melanie, Murphy, Robert W.
Udgivet i Ecol Evol (2016)

Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection

af Hsieh, PingHsun, Veeramah, Krishna R., Lachance, Joseph, Tishkoff, Sarah A., Wall, Jeffrey D., Hammer, Michael F., Gutenkunst, Ryan N.
Udgivet i Genome Res (2016)

Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies

af Hsieh, PingHsun, Woerner, August E., Wall, Jeffrey D., Lachance, Joseph, Tishkoff, Sarah A., Gutenkunst, Ryan N., Hammer, Michael F.
Udgivet i Genome Res (2016)

Corrigendum: Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies

af Hsieh, PingHsun, Woerner, August E., Wall, Jeffrey D., Lachance, Joseph, Tishkoff, Sarah A., Gutenkunst, Ryan N., Hammer, Michael F.
Udgivet i Genome Res (2016)

Recurrent inversion toggling and great ape genome evolution

af Porubsky, David, Sanders, Ashley D., Höps, Wolfram, Hsieh, PingHsun, Sulovari, Arvis, Li, Ruiyang, Mercuri, Ludovica, Sorensen, Melanie, Murali, Shwetha C., Gordon, David, Cantsilieris, Stuart, Pollen, Alex A., Ventura, Mario, Antonacci, Francesca, Marschall, Tobias, Korbel, Jan O., Eichler, Evan E.
Udgivet i Nat Genet (2020)

Adaptive archaic introgression of copy number variants and the discovery of previously unknown human genes

af Hsieh, PingHsun, Vollger, Mitchell R., Dang, Vy, Porubsky, David, Baker, Carl, Cantsilieris, Stuart, Hoekzema, Kendra, Lewis, Alexandra P., Munson, Katherine M., Sorensen, Melanie, Kronenberg, Zev N., Murali, Shwetha, Nelson, Bradley J., Chiatante, Giorgia, Maggiolini, Flavia Angela Maria, Blanché, Hélène, Underwood, Jason G., Antonacci, Francesca, Deleuze, Jean-François, Eichler, Evan E.
Udgivet i Science (2019)

An evolutionary driver of interspersed segmental duplications in primates

af Cantsilieris, Stuart, Sunkin, Susan M., Johnson, Matthew E., Anaclerio, Fabio, Huddleston, John, Baker, Carl, Dougherty, Max L., Underwood, Jason G., Sulovari, Arvis, Hsieh, PingHsun, Mao, Yafei, Catacchio, Claudia Rita, Malig, Maika, Welch, AnneMarie E., Sorensen, Melanie, Munson, Katherine M., Jiang, Weihong, Girirajan, Santhosh, Ventura, Mario, Lamb, Bruce T., Conlon, Ronald A., Eichler, Evan E.
Udgivet i Genome Biol (2020)

The structure, function and evolution of a complete human chromosome 8

af Logsdon, Glennis A., Vollger, Mitchell R., Hsieh, PingHsun, Mao, Yafei, Liskovykh, Mikhail A., Koren, Sergey, Nurk, Sergey, Mercuri, Ludovica, Dishuck, Philip C., Rhie, Arang, de Lima, Leonardo G., Dvorkina, Tatiana, Porubsky, David, Harvey, William T., Mikheenko, Alla, Bzikadze, Andrey V., Kremitzki, Milinn, Graves-Lindsay, Tina A., Jain, Chirag, Hoekzema, Kendra, Murali, Shwetha C., Munson, Katherine M., Baker, Carl, Sorensen, Melanie, Lewis, Alexandra M., Surti, Urvashi, Gerton, Jennifer L., Larionov, Vladimir, Ventura, Mario, Miga, Karen H., Phillippy, Adam M., Eichler, Evan E.
Udgivet i Nature (2021)

A high-quality bonobo genome refines the analysis of hominid evolution

af Mao, Yafei, Catacchio, Claudia R., Hillier, LaDeana W., Porubsky, David, Li, Ruiyang, Sulovari, Arvis, Fernandes, Jason D., Montinaro, Francesco, Gordon, David S., Storer, Jessica M., Haukness, Marina, Fiddes, Ian T., Murali, Shwetha Canchi, Dishuck, Philip C., Hsieh, PingHsun, Harvey, William T., Audano, Peter A., Mercuri, Ludovica, Piccolo, Ilaria, Antonacci, Francesca, Munson, Katherine M., Lewis, Alexandra P., Baker, Carl, Underwood, Jason G., Hoekzema, Kendra, Huang, Tzu-Hsueh, Sorensen, Melanie, Walker, Jerilyn A., Hoffman, Jinna, Thibaud-Nissen, Françoise, Salama, Sofie R., Pang, Andy W. C., Lee, Joyce, Hastie, Alex R., Paten, Benedict, Batzer, Mark A., Diekhans, Mark, Ventura, Mario, Eichler, Evan E.
Udgivet i Nature (2021)

High-resolution comparative analysis of great ape genomes

af Kronenberg, Zev N., Fiddes, Ian T., Gordon, David, Murali, Shwetha, Cantsilieris, Stuart, Meyerson, Olivia S., Underwood, Jason G., Nelson, Bradley J., Chaisson, Mark J.P., Dougherty, Max L., Munson, Katherine M., Hastie, Alex R., Diekhans, Mark, Hormozdiari, Fereydoun, Lorusso, Nicola, Hoekzema, Kendra, Qiu, Ruolan, Clark, Karen, Raja, Archana, Welch, AnneMarie E., Sorensen, Melanie, Baker, Carl, Fulton, Robert S., Armstrong, Joel, Graves-Lindsay, Tina A., Denli, Ahmet M., Hoppe, Emma R., Hsieh, PingHsun, Hill, Christopher M., Pang, Andy Wing Chun, Lee, Joyce, Lam, Ernest T., Dutcher, Susan K., Gage, Fred H., Warren, Wesley C., Shendure, Jay, Haussler, David, Schneider, Valerie A., Cao, Han, Ventura, Mario, Wilson, Richard K., Paten, Benedict, Pollen, Alex, Eichler, Evan E.
Udgivet i Science (2018)

Haplotype-resolved diverse human genomes and integrated analysis of structural variation

af Ebert, Peter, Audano, Peter A., Zhu, Qihui, Rodriguez-Martin, Bernardo, Porubsky, David, Bonder, Marc Jan, Sulovari, Arvis, Ebler, Jana, Zhou, Weichen, Mari, Rebecca Serra, Yilmaz, Feyza, Zhao, Xuefang, Hsieh, PingHsun, Lee, Joyce, Kumar, Sushant, Lin, Jiadong, Rausch, Tobias, Chen, Yu, Ren, Jingwen, Santamarina, Martin, Höps, Wolfram, Ashraf, Hufsah, Chuang, Nelson T., Yang, Xiaofei, Munson, Katherine M., Lewis, Alexandra P., Fairley, Susan, Tallon, Luke J., Clarke, Wayne E., Basile, Anna O., Byrska-Bishop, Marta, Corvelo, André, Evani, Uday S., Lu, Tsung-Yu, Chaisson, Mark J.P., Chen, Junjie, Li, Chong, Brand, Harrison, Wenger, Aaron M., Ghareghani, Maryam, Harvey, William T., Raeder, Benjamin, Hasenfeld, Patrick, Regier, Allison A., Abel, Haley J., Hall, Ira M., Flicek, Paul, Stegle, Oliver, Gerstein, Mark B., Tubio, Jose M.C., Mu, Zepeng, Li, Yang I., Shi, Xinghua, Hastie, Alex R., Ye, Kai, Chong, Zechen, Sanders, Ashley D., Zody, Michael C., Talkowski, Michael E., Mills, Ryan E., Devine, Scott E., Lee, Charles, Korbel, Jan O., Marschall, Tobias, Eichler, Evan E.
Udgivet i Science (2021)