Free-energy landscape of a chameleon sequence in explicit water and its inherent α/β bifacial property

Por Ikeda, Kazuyoshi, Higo, Junichi
Publicado em 2003

Virtual states introduced for overcoming entropic barriers in conformational space

Por Higo, Junichi, Nakamura, Haruki
Publicado no Biophysics (Nagoya-shi) (2012)

Conformational transition states of a β-hairpin peptide between the ordered and disordered conformations in explicit water

Por Kamiya, Narutoshi, Higo, Junichi, Nakamura, Haruki
Publicado em 2002

Multi-scale Ensemble Modeling of Modular Proteins with Intrinsically Disordered Linker Regions: Application to p53

Por Terakawa, Tsuyoshi, Higo, Junichi, Takada, Shoji
Publicado em 2014

Enhanced conformational sampling to visualize a free-energy landscape of protein complex formation

Por Iida, Shinji, Nakamura, Haruki, Higo, Junichi
Publicado no Biochem J (2016)

Enhanced sampling simulations to construct free-energy landscape of protein–partner substrate interaction

Por Ikebe, Jinzen, Umezawa, Koji, Higo, Junichi
Publicado no Biophys Rev (2016)

Protein-segment universe exhibiting transitions at intermediate segment length in conformational subspaces

Por Ikeda, Kazuyoshi, Hirokawa, Takatsugu, Higo, Junichi, Tomii, Kentaro
Publicado em 2008

Enhanced and effective conformational sampling of protein molecular systems for their free energy landscapes

Por Higo, Junichi, Ikebe, Jinzen, Kamiya, Narutoshi, Nakamura, Haruki
Publicado em 2012

Ab initio simulation of a 57-residue protein in explicit solvent reproduces the native conformation in the lowest free-energy cluster

Por Ikebe, Jinzen, Standley, Daron M, Nakamura, Haruki, Higo, Junichi
Publicado em 2011

Large vortex-like structure of dipole field in computer models of liquid water and dipole-bridge between biomolecules

Por Higo, Junichi, Sasai, Masaki, Shirai, Hiroki, Nakamura, Haruki, Kugimiya, Takaki
Publicado em 2001

Conformational Ensembles of an Intrinsically Disordered Protein pKID with and without a KIX Domain in Explicit Solvent Investigated by All-Atom Multicanonical Molecular Dynamics

Por Umezawa, Koji, Ikebe, Jinzen, Takano, Mitsunori, Nakamura, Haruki, Higo, Junichi
Publicado em 2012

Simulation study on the disordered state of an Alzheimer's β amyloid peptide Aβ(12–36) in water consisting of random-structural, β-structural, and helical clusters

Por Ikebe, Jinzen, Kamiya, Narutoshi, Ito, Jun-Ichi, Shindo, Heisaburo, Higo, Junichi
Publicado em 2007

Universal partitioning of the hierarchical fold network of 50-residue segments in proteins

Por Ito, Jun-ichi, Sonobe, Yuki, Ikeda, Kazuyoshi, Tomii, Kentaro, Higo, Junichi
Publicado em 2009

Energy landscape of a peptide consisting of α-helix, 3(10)-helix, β-turn, β-hairpin, and other disordered conformations

Por Higo, Junichi, Ito, Nobutoshi, Kuroda, Masataka, Ono, Satoshi, Nakajima, Nobuyuki, Nakamura, Haruki
Publicado em 2001

Dynamics of the Extended String-Like Interaction of TFIIE with the p62 Subunit of TFIIH

Por Okuda, Masahiko, Higo, Junichi, Komatsu, Tadashi, Konuma, Tsuyoshi, Sugase, Kenji, Nishimura, Yoshifumi
Publicado no Biophys J (2016)

Visualization of conformational distribution of short to medium size segments in globular proteins and identification of local structural motifs

Por Ikeda, Kazuyoshi, Tomii, Kentaro, Yokomizo, Tsuyoshi, Mitomo, Daisuke, Maruyama, Keiichiro, Suzuki, Shinya, Higo, Junichi
Publicado em 2005

Thymine at −5 Is Crucial for cpc Promoter Activity of Synechocystis sp. Strain PCC 6714

Por Imashimizu, Masahiko, Fujiwara, Shoko, Tanigawa, Ryohei, Tanaka, Kan, Hirokawa, Takatsugu, Nakajima, Yuji, Higo, Junichi, Tsuzuki, Mikio
Publicado em 2003

myPresto/omegagene: a GPU-accelerated molecular dynamics simulator tailored for enhanced conformational sampling methods with a non-Ewald electrostatic scheme

Por Kasahara, Kota, Ma, Benson, Goto, Kota, Dasgupta, Bhaskar, Higo, Junichi, Fukuda, Ikuo, Mashimo, Tadaaki, Akiyama, Yutaka, Nakamura, Haruki
Publicado no Biophys Physicobiol (2016)

Variation of free‐energy landscape of the p53 C‐terminal domain induced by acetylation: Enhanced conformational sampling

Por Iida, Shinji, Mashimo, Tadaaki, Kurosawa, Takashi, Hojo, Hironobu, Muta, Hiroya, Goto, Yuji, Fukunishi, Yoshifumi, Nakamura, Haruki, Higo, Junichi
Publicado no J Comput Chem (2016)