Comparison of Penalty Functions for Sparse Canonical Correlation Analysis

by Chalise, Prabhakar, Fridley, Brooke L.
Published 2012

Integrative clustering of multi-level ‘omic data based on non-negative matrix factorization algorithm

by Chalise, Prabhakar, Fridley, Brooke L.
Published in PLoS One (2017)

Localizing Putative Markers in Genetic Association Studies by Incorporating Linkage Disequilibrium into Bayesian Hierarchical Models

by Fridley, Brooke L., Jenkins, Gregory D.
Published 2010

Gene set analysis of SNP data: benefits, challenges, and future directions

by Fridley, Brooke L, Biernacka, Joanna M
Published 2011

PurBayes: estimating tumor cellularity and subclonality in next-generation sequencing data

by Larson, Nicholas B., Fridley, Brooke L.
Published 2013

DNA Methylation in Ovarian Cancer Susceptibility

by Reid, Brett M., Fridley, Brooke L.
Published in Cancers (Basel) (2020)

Imputation methods for missing data for polygenic models

by Fridley, Brooke, Rabe, Kari, Andrade, Mariza de
Published 2003

InterSIM: Simulation tool for multiple integrative ‘omic datasets’

by Chalise, Prabhakar, Raghavan, Rama, Fridley, Brooke L.
Published in Comput Methods Programs Biomed (2016)

Network-based integrative clustering of multiple types of genomic data using non-negative matrix factorization

by Chalise, Prabhakar, Ni, Yonghui, Fridley, Brooke L.
Published in Comput Biol Med (2020)

Comparison of normalization approaches for gene expression studies completed with high-throughput sequencing

by Abbas-Aghababazadeh, Farnoosh, Li, Qian, Fridley, Brooke L.
Published in PLoS One (2018)

Nonlinear mixed-effects models for modeling in vitro drug response data to determine problematic cancer cell lines

by Abbas-Aghababazadeh, Farnoosh, Lu, Pengcheng, Fridley, Brooke L.
Published in Sci Rep (2019)

Statistical genomics in rare cancer

by Abbas-Aghababazadeh, Farnoosh, Mo, Qianxing, Fridley, Brooke L.
Published in Semin Cancer Biol (2019)

Self-Contained Gene-Set Analysis of Expression Data: An Evaluation of Existing and Novel Methods

by Fridley, Brooke L., Jenkins, Gregory D., Biernacka, Joanna M.
Published 2010

Sestrin Family of Genes and their role in Cancer-related Fatigue

by Gonzalez, Velda J., Fridley, Brooke L., Saligan, Leorey N.
Published in Support Care Cancer (2018)

A Bayesian hierarchical nonlinear model for assessing the association between genetic variation and drug cytotoxicity

by Fridley, Brooke L., Jenkins, Greg, Schaid, Daniel J., Wang, Liewei
Published 2009

Identifying the Genetic Variation of Gene Expression Using Gene Sets: Application of Novel Gene Set eQTL Approach to PharmGKB and KEGG

by Abo, Ryan, Jenkins, Gregory D., Wang, Liewei, Fridley, Brooke L.
Published 2012

A Bayesian Integrative Genomic Model for Pathway Analysis of Complex Traits

by Fridley, Brooke L., Lund, Steven, Jenkins, Gregory D., Wang, Liewei
Published 2012

Comparison of variable and model selection methods for genetic association studies using the GAW15 simulated data

by Ye, Zhan, Atkinson, Elizabeth J, Fridley, Brooke L, de Andrade, Mariza
Published 2007

Density of Common Complex Ocular Traits in the Aging Eye: Analysis of Secondary Traits in Genome-Wide Association Studies

by Edwards, Albert O., Lee, Sung J., Fridley, Brooke L., Tosakulwong, Nirubol
Published 2008

Genetic Association Studies of Copy-Number Variation: Should Assignment of Copy Number States Precede Testing?

by Breheny, Patrick, Chalise, Prabhakar, Batzler, Anthony, Wang, Liewei, Fridley, Brooke L.
Published 2012