Proteomics as the final step in the functional metagenomics study of antimicrobial resistance

by Fouhy, Fiona, Stanton, Catherine, Cotter, Paul D., Hill, Colin, Walsh, Fiona
Published in Front Microbiol (2015)

Composition of the early intestinal microbiota: Knowledge, knowledge gaps and the use of high-throughput sequencing to address these gaps

by Fouhy, Fiona, Ross, R. Paul, Fitzgerald, Gerald F., Stanton, Catherine, Cotter, Paul D.
Published 2012

A degenerate PCR-based strategy as a means of identifying homologues of aminoglycoside and β-lactam resistance genes in the gut microbiota

by Fouhy, Fiona, Ross, R Paul, Fitzgerald, Gerald F, Stanton, Catherine, Cotter, Paul D
Published 2014

16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform

by Fouhy, Fiona, Clooney, Adam G., Stanton, Catherine, Claesson, Marcus J., Cotter, Paul D.
Published in BMC Microbiol (2016)

Dietary Patterns Are Associated with Serum Metabolite Patterns and Their Association Is Influenced by Gut Bacteria among Older German Adults

by Oluwagbemigun, Kolade, Foerster, Jana, Watkins, Claire, Fouhy, Fiona, Stanton, Catherine, Bergmann, Manuela M, Boeing, Heiner, Nöthlings, Ute
Published in J Nutr (2020)

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis

by Clooney, Adam G., Fouhy, Fiona, Sleator, Roy D., O’ Driscoll, Aisling, Stanton, Catherine, Cotter, Paul D., Claesson, Marcus J.
Published in PLoS One (2016)

Unravelling the metabolic impact of SBS-associated microbial dysbiosis: Insights from the piglet short bowel syndrome model

by Pereira-Fantini, Prue M., Byars, Sean G., Pitt, James, Lapthorne, Susan, Fouhy, Fiona, Cotter, Paul D., Bines, Julie E.
Published in Sci Rep (2017)

In Silico Assigned Resistance Genes Confer Bifidobacterium with Partial Resistance to Aminoglycosides but Not to Β-Lactams

by Fouhy, Fiona, O’Connell Motherway, Mary, Fitzgerald, Gerald F., Ross, R. Paul, Stanton, Catherine, van Sinderen, Douwe, Cotter, Paul D.
Published 2013

Effect of storage, temperature, and extraction kit on the phylogenetic composition detected in the human milk microbiota

by Lyons, Katriona E., Fouhy, Fiona, O’ Shea, Carol‐Anne, Ryan, C. Anthony, Dempsey, Eugene M., Ross, R. Paul, Stanton, Catherine
Published in Microbiologyopen (2020)

The Effects of Freezing on Faecal Microbiota as Determined Using MiSeq Sequencing and Culture-Based Investigations

by Fouhy, Fiona, Deane, Jennifer, Rea, Mary C., O’Sullivan, Órla, Ross, R. Paul, O’Callaghan, Grace, Plant, Barry J., Stanton, Catherine
Published in PLoS One (2015)

Effect of broad- and narrow-spectrum antimicrobials on Clostridium difficile and microbial diversity in a model of the distal colon

by Rea, Mary C., Dobson, Alleson, O'Sullivan, Orla, Crispie, Fiona, Fouhy, Fiona, Cotter, Paul D., Shanahan, Fergus, Kiely, Barry, Hill, Colin, Ross, R. Paul
Published 2011

Microbial Composition of Human Appendices from Patients following Appendectomy

by Guinane, Caitriona M., Tadrous, Amany, Fouhy, Fiona, Ryan, C. Anthony, Dempsey, Eugene M., Murphy, Brendan, Andrews, Emmet, Cotter, Paul D., Stanton, Catherine, Ross, R. Paul
Published 2013

Identification of Aminoglycoside and β-Lactam Resistance Genes from within an Infant Gut Functional Metagenomic Library

by Fouhy, Fiona, Ogilvie, Lesley A., Jones, Brian V., Ross, R. Paul, Ryan, Anthony C., Dempsey, Eugene M., Fitzgerald, Gerald F., Stanton, Catherine, Cotter, Paul D.
Published 2014

Enduring neurobehavioral effects induced by microbiota depletion during the adolescent period

by Lach, Gilliard, Fülling, Christine, Bastiaanssen, Thomaz F. S., Fouhy, Fiona, Donovan, Aoife N. O’, Ventura-Silva, Ana Paula, Stanton, Catherine, Dinan, Timothy G., Cryan, John F.
Published in Transl Psychiatry (2020)

Changes in the colon microbiota and intestinal cytokine gene expression following minimal intestinal surgery

by Lapthorne, Susan, Bines, Julie E, Fouhy, Fiona, Dellios, Nicole L, Wilson, Guineva, Thomas, Sarah L, Scurr, Michelle, Stanton, Catherine, Cotter, Paul D, Pereira-Fantini, Prue M
Published in World J Gastroenterol (2015)

High-Throughput Sequencing Reveals the Incomplete, Short-Term Recovery of Infant Gut Microbiota following Parenteral Antibiotic Treatment with Ampicillin and Gentamicin

by Fouhy, Fiona, Guinane, Caitriona M., Hussey, Seamus, Wall, Rebecca, Ryan, C. Anthony, Dempsey, Eugene M., Murphy, Brendan, Ross, R. Paul, Fitzgerald, Gerald F., Stanton, Catherine, Cotter, Paul D.
Published 2012

Perinatal factors affect the gut microbiota up to four years after birth

by Fouhy, Fiona, Watkins, Claire, Hill, Cian J., O’Shea, Carol-Anne, Nagle, Brid, Dempsey, Eugene M., O’Toole, Paul W., Ross, R. Paul, Ryan, C. Anthony, Stanton, Catherine
Published in Nat Commun (2019)

The gut microbiome influences the bioavailability of olanzapine in rats

by Cussotto, Sofia, Walsh, Jacinta, Golubeva, Anna V., Zhdanov, Alexander V., Strain, Conall R., Fouhy, Fiona, Stanton, Catherine, Dinan, Timothy G., Hyland, Niall P., Clarke, Gerard, Cryan, John F., Griffin, Brendan T.
Published in EBioMedicine (2021)

Chronic intermittent hypoxia disrupts cardiorespiratory homeostasis and gut microbiota composition in adult male guinea-pigs

by Lucking, Eric F., O'Connor, Karen M., Strain, Conall R., Fouhy, Fiona, Bastiaanssen, Thomaz F.S., Burns, David P., Golubeva, Anna V., Stanton, Catherine, Clarke, Gerard, Cryan, John F., O'Halloran, Ken D.
Published in EBioMedicine (2018)

Preventing adolescent stress-induced cognitive and microbiome changes by diet

by Provensi, Gustavo, Schmidt, Scheila Daiane, Boehme, Marcus, Bastiaanssen, Thomaz F. S., Rani, Barbara, Costa, Alessia, Busca, Kizkitza, Fouhy, Fiona, Strain, Conall, Stanton, Catherine, Blandina, Patrizio, Izquierdo, Ivan, Cryan, John F., Passani, Maria Beatrice
Published in Proc Natl Acad Sci U S A (2019)