Toward a comprehensive language for biological systems

Por Faeder James R
Publicado em 2011-10-01

Toward a comprehensive language for biological systems

Por Faeder, James R
Publicado em 2011

Detailed qualitative dynamic knowledge representation using a BioNetGen model of TLR-4 signaling and preconditioning

Por An, Gary C., Faeder, James R.
Publicado em 2008

Reductionism Is Dead: Long Live Reductionism! Systems Modeling Needs Reductionist Experiments

Por Faeder, James R., Morel, Penelope A.
Publicado no Biophys J (2016)

Shaping the response: The role of FcεRI and Syk expression levels in mast cell signaling

Por Nag, Ambarish, Faeder, James R., Goldstein, Byron
Publicado em 2010

The interplay of double phosphorylation and scaffolding in MAPK pathways

Por Kocieniewski, Paweł, Faeder, James R., Lipniacki, Tomasz
Publicado em 2011

Structure-Based Kinetic Models of Modular Signaling Protein Function: Focus on Shp2

Por Barua, Dipak, Faeder, James R., Haugh, Jason M.
Publicado em 2007

Computational Models of Tandem Src Homology 2 Domain Interactions and Application to Phosphoinositide 3-Kinase

Por Barua, Dipak, Faeder, James R., Haugh, Jason M.
Publicado em 2008

A Bipolar Clamp Mechanism for Activation of Jak-Family Protein Tyrosine Kinases

Por Barua, Dipak, Faeder, James R., Haugh, Jason M.
Publicado em 2009

Toward a quantitative theory of intrinsically disordered proteins and their function

Por Liu, Jintao, Faeder, James R., Camacho, Carlos J.
Publicado em 2009

Stochastic effects and bistability in T cell receptor signaling

Por Lipniacki, Tomasz, Hat, Beata, Faeder, James R., Hlavacek, William S.
Publicado em 2008

Synergism between Different Germinant Receptors in the Germination of Bacillus subtilis Spores

Por Yi, Xuan, Liu, Jintao, Faeder, James R., Setlow, Peter
Publicado em 2011

Synergism between Different Germinant Receptors in the Germination of Bacillus subtilis Spores

Por Yi, Xuan, Liu, Jintao, Faeder, James R., Setlow, Peter
Publicado em 2011

Kinetic Proofreading of Ligand-FcεRI Interactions May Persist beyond LAT Phosphorylation

Por Torigoe, Chikako, Faeder, James R., Oliver, Janet M., Goldstein, Byron
Publicado em 2007

Kinetic Monte Carlo Method for Rule-based Modeling of Biochemical Networks

Por Yang, Jin, Monine, Michael I., Faeder, James R., Hlavacek, William S.
Publicado em 2008

Aggregation of Membrane Proteins by Cytosolic Cross-Linkers: Theory and Simulation of the LAT-Grb2-SOS1 System

Por Nag, Ambarish, Monine, Michael I., Faeder, James R., Goldstein, Byron
Publicado em 2009

Memory of Germinant Stimuli in Bacterial Spores

Por Wang, Shiwei, Faeder, James R., Setlow, Peter, Li, Yong-qing
Publicado no mBio (2015)

Domain-Oriented Reduction of Rule-Based Network Models

Por Borisov, Nikolay M., Chistopolsky, Alexander S., Faeder, James R., Kholodenko, Boris N.
Publicado em 2008

RuleBender: a visual interface for rule-based modeling

Por Xu, Wen, Smith, Adam M., Faeder, James R., Marai, G. Elisabeta
Publicado em 2011

Modeling for (physical) biologists: an introduction to the rule-based approach

Por Chylek, Lily A, Harris, Leonard A, Faeder, James R, Hlavacek, William S
Publicado no Phys Biol (2015)