Approach to the Treatment of a Patient with an Aggressive Pituitary Tumor

par Lin, Andrew L, Donoghue, Mark T A, Wardlaw, Sharon L, Yang, T Jonathan, Bodei, Lisa, Tabar, Viviane, Geer, Eliza B
Publié dans J Clin Endocrinol Metab (2020)

High-Resolution Analysis of Parent-of-Origin Allelic Expression in the Arabidopsis Endosperm

par Wolff, Philip, Weinhofer, Isabelle, Seguin, Jonathan, Roszak, Pawel, Beisel, Christian, Donoghue, Mark T. A., Spillane, Charles, Nordborg, Magnus, Rehmsmeier, Marc, Köhler, Claudia
Publié 2011

Paternally Expressed Imprinted Genes under Positive Darwinian Selection in Arabidopsis thaliana

par Tuteja, Reetu, McKeown, Peter C, Ryan, Pat, Morgan, Claire C, Donoghue, Mark T A, Downing, Tim, O’Connell, Mary J, Spillane, Charles
Publié dans Mol Biol Evol (2019)

C(m)CGG Methylation-Independent Parent-of-Origin Effects on Genome-Wide Transcript Levels in Isogenic Reciprocal F1 Triploid Plants

par Donoghue, Mark T.A., Fort, Antoine, Clifton, Rachel, Zhang, Xu, McKeown, Peter C., Voigt-Zielinksi, M.L., Borevitz, Justin O., Spillane, Charles
Publié 2014

Molecular Changes in Retinoblastoma beyond RB1: Findings from Next-Generation Sequencing

par Francis, Jasmine H., Richards, Allison L., Mandelker, Diana L., Berger, Michael F., Walsh, Michael F., Dunkel, Ira J., Donoghue, Mark T. A., Abramson, David H.
Publié dans Cancers (Basel) (2021)

MicroRNA-9 Inhibition of Cell Proliferation and Identification of Novel miR-9 Targets by Transcriptome Profiling in Breast Cancer Cells

par Selcuklu, S. Duygu, Donoghue, Mark T. A., Rehmet, Kristina, de Souza Gomes, Matheus, Fort, Antoine, Kovvuru, Prasad, Muniyappa, Mohan K., Kerin, Michael J., Enright, Anton J., Spillane, Charles
Publié 2012

Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA

par Calarco, Joseph P., Borges, Filipe, Donoghue, Mark T.A., Van Ex, Frédéric, Jullien, Pauline E., Lopes, Telma, Gardner, Rui, Berger, Frédéric, Feijó, José A., Becker, Jörg D., Martienssen, Robert A.
Publié 2012

Transgenerational effects of inter-ploidy cross direction on reproduction and F2 seed development of Arabidopsis thaliana F1 hybrid triploids

par Duszynska, Dorota, Vilhjalmsson, Bjarni, Castillo Bravo, Rosa, Swamidatta, Sandesh, Juenger, Thomas E., Donoghue, Mark T. A., Comte, Aurélie, Nordborg, Magnus, Sharbel, Timothy F., Brychkova, Galina, McKeown, Peter C., Spillane, Charles
Publié dans Plant Reprod (2019)

Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication

par Jacob, Yannick, Bergamin, Elisa, Donoghue, Mark T.A., Mongeon, Vanessa, LeBlanc, Chantal, Voigt, Philipp, Underwood, Charles J., Brunzelle, Joseph S., Michaels, Scott D., Reinberg, Danny, Couture, Jean-François, Martienssen, Robert A.
Publié 2014

Mucinous tubular and spindle-cell carcinoma of the kidney: Clinical features, genomic profiles, and treatment outcomes.

par Ged, Yasser, Chen, Ying-Bei, Knezevic, Andrea, Donoghue, Mark T.A, Carlo, Maria I., Lee, Chung-Han, Feldman, Darren R., Patil, Sujata, Hakimi, A. Ari, Russo, Paul, Voss, Martin H., Motzer, Robert J.
Publié dans Clin Genitourin Cancer (2019)

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA

par Regulski, Michael, Lu, Zhenyuan, Kendall, Jude, Donoghue, Mark T.A., Reinders, Jon, Llaca, Victor, Deschamps, Stephane, Smith, Andrew, Levy, Dan, McCombie, W. Richard, Tingey, Scott, Rafalski, Antoni, Hicks, James, Ware, Doreen, Martienssen, Robert A.
Publié 2013

Genomic Landscape of Uterine Sarcomas Defined through Prospective Clinical Sequencing

par Hensley, Martee L., Chavan, Shweta S., Solit, David B., Murali, Rajmohan, Soslow, Robert A., Chiang, Sarah, Jungbluth, Achim A., Bandlamudi, Chaitanya, Srinivasan, Preethi, Tap, William D., Rosenbaum, Evan, Taylor, Barry S., Donoghue, Mark T.A., Hyman, David M.
Publié dans Clin Cancer Res (2020)

A Phase II Trial of Albumin-Bound Paclitaxel and Gemcitabine in Patients with Newly Diagnosed Stage IV Squamous Cell Lung Cancers

par Paik, Paul K., Kim, Rachel, Ahn, Linda, Plodkowski, Andrew, Ni, Ai, Donoghue, Mark T.A., Jonsson, Philip, Villalona-Calero, Miguel, Ng, Kenneth K., McFarland, Daniel, Fiore, John J., Iqbal, Afsheen, Eng, Juliana, Kris, Mark G., Rudin, Charles M.
Publié dans Clin Cancer Res (2020)

Clinical Outcome of Leiomyosarcomas With Somatic Alteration in Homologous Recombination Pathway Genes

par Rosenbaum, Evan, Jonsson, Philip, Seier, Kenneth, Qin, Li-Xuan, Chi, Ping, Dickson, Mark, Gounder, Mrinal, Kelly, Ciara, Keohan, Mary L., Nacev, Benjamin, Donoghue, Mark T. A., Chiang, Sarah, Singer, Samuel, Ladanyi, Marc, Antonescu, Cristina R., Hensley, Martee L., Movva, Sujana, D’Angelo, Sandra P., Tap, William D.
Publié dans JCO Precis Oncol (2020)

Clinical and molecular correlates of PD-L1 expression in patients with lung adenocarcinomas

par Schoenfeld, Adam J., Rizvi, Hira, Bandlamudi, Chaitanya, Sauter, Jennifer L., Travis, William D., Rekhtman, Natasha, Plodkowski, Andrew J., Perez-Johnston, Rocio, Sawan, Peter, Beras, Amanda, Egger, Jacklynn V., Ladanyi, Marc, Arbour, Kathryn C., Rudin, Charles M., Riely, Gregory J., Taylor, Barry S., Donoghue, Mark T.A., Hellmann, Matthew D.
Publié dans Ann Oncol (2020)

Genome doubling shapes the evolution and prognosis of advanced cancers

par Bielski, Craig M., Zehir, Ahmet, Penson, Alexander V., Donoghue, Mark T.A., Chatila, Walid, Armenia, Joshua, Chang, Matthew T., Schram, Alison M., Jonsson, Philip, Bandlamudi, Chaitanya, Razavi, Pedram, Iyer, Gopa, Robson, Mark E., Stadler, Zsofia K., Schultz, Nikolaus, Baselga, Jose, Solit, David B., Hyman, David M., Berger, Michael F., Taylor, Barry S.
Publié dans Nat Genet (2018)

Widespread selection for oncogenic mutant allele imbalance in cancer

par Bielski, Craig M., Donoghue, Mark T.A., Gadiya, Mayur, Hanrahan, Aphrothiti J., Won, Helen H., Chang, Matthew T., Jonsson, Philip, Penson, Alexander V., Gorelick, Alexander, Harris, Christopher, Schram, Alison M., Syed, Aijazuddin, Zehir, Ahmet, Chapman, Paul B., Hyman, David M., Solit, David B., Shannon, Kevin, Chandarlapaty, Sarat, Berger, Michael F., Taylor, Barry S.
Publié dans Cancer Cell (2018)

Genomic Characterization of Upper-Tract Urothelial Carcinoma in Patients With Lynch Syndrome

par Donahue, Timothy F., Bagrodia, Aditya, Audenet, François, Donoghue, Mark T.A., Cha, Eugene K., Sfakianos, John P., Sperling, Dahlia, Al-Ahmadie, Hikmat, Clendenning, Mark, Rosty, Christophe, Buchanan, Daniel D., Jenkins, Mark, Hopper, John, Winship, Ingrid, Templeton, Allyson S., Walsh, Michael F., Stadler, Zsofia K., Iyer, Gopa, Taylor, Barry, Coleman, Jonathan, Lindor, Noralane M., Solit, David B., Bochner, Bernard H.
Publié dans JCO Precis Oncol (2018)

The Genomic Landscape of SMARCA4 Alterations and Associations with Outcomes in Patients with Lung Cancer

par Schoenfeld, Adam J., Bandlamudi, Chai, Lavery, Jessica A., Montecalvo, Joseph, Namakydoust, Azadeh, Rizvi, Hira, Egger, Jacklynn, Concepcion, Carla P., Paul, Sonal, Arcila, Maria E., Daneshbod, Yahya, Chang, Jason, Sauter, Jennifer L., Beras, Amanda, Ladanyi, Marc, Jacks, Tyler, Rudin, Charles M., Taylor, Barry S., Donoghue, Mark T.A., Heller, Glenn, Hellmann, Matthew D., Rekhtman, Natasha, Riely, Gregory J.
Publié dans Clin Cancer Res (2020)

Genetic and molecular subtype heterogeneity in newly diagnosed early- and advanced-stage endometrial cancer

par Da Cruz Paula, Arnaud, DeLair, Deborah F, Ferrando, Lorenzo, Fix, Daniel J, Soslow, Robert A, Park, Kay J, Chiang, Sarah, Reis-Filho, Jorge S, Zehir, Ahmet, Donoghue, Mark T.A., Wu, Michelle, Brown, David N, Murali, Rajmohan, Friedman, Claire F, Zamarin, Dmitriy, Makker, Vicky, Mueller, Jennifer J, Leitao, Mario M, Abu-Rustum, Nadeem R, Aghajanian, Carol, Weigelt, Britta
Publié dans Gynecol Oncol (2021)