The folded k-spectrum kernel: A machine learning approach to detecting transcription factor binding sites with gapped nucleotide dependencies

Yazar: Elmas, Abdulkadir, Wang, Xiaodong, Dresch, Jacqueline M.
Yayımlandı PLoS One (2017)

MARZ: an algorithm to combinatorially analyze gapped n-mer models of transcription factor binding

Yazar: Zellers, Rowan G, Drewell, Robert A, Dresch, Jacqueline M
Yayımlandı BMC Bioinformatics (2015)

Spatial distribution of predicted transcription factor binding sites in Drosophila ChIP peaks

Yazar: Pettie, Kade P., Dresch, Jacqueline M., Drewell, Robert A.
Yayımlandı Mech Dev (2016)

Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effects

Yazar: Dresch, Jacqueline M, Liu, Xiaozhou, Arnosti, David N, Ay, Ahmet
Baskı/Yayın Bilgisi 2010

Global sensitivity analysis of a dynamic model for gene expression in Drosophila embryos

Yazar: McCarthy, Gregory D., Drewell, Robert A., Dresch, Jacqueline M.
Yayımlandı PeerJ (2015)

Flanking sequence context-dependent transcription factor binding in early Drosophila development

Yazar: Stringham, Jessica L, Brown, Adam S, Drewell, Robert A, Dresch, Jacqueline M
Baskı/Yayın Bilgisi 2013

TWO-LAYER MATHEMATICAL MODELING OF GENE EXPRESSION: INCORPORATING DNA-LEVEL INFORMATION AND SYSTEM DYNAMICS()

Yazar: DRESCH, JACQUELINE M., THOMPSON, MARC A., ARNOSTI, DAVID N., CHIU, CHICHIA
Baskı/Yayın Bilgisi 2013

Nucleotide Interdependency in Transcription Factor Binding Sites in the Drosophila Genome

Yazar: Dresch, Jacqueline M., Zellers, Rowan G., Bork, Daniel K., Drewell, Robert A.
Yayımlandı Gene Regul Syst Bio (2016)

Quantitative perturbation-based analysis of gene expression predicts enhancer activity in early Drosophila embryo

Yazar: Sayal, Rupinder, Dresch, Jacqueline M, Pushel, Irina, Taylor, Benjamin R, Arnosti, David N
Yayımlandı eLife (2016)

Deciphering the combinatorial architecture of a Drosophila homeotic gene enhancer

Yazar: Drewell, Robert A., Nevarez, Michael J., Kurata, Jessica S., Winkler, Lauren N., Li, Lily, Dresch, Jacqueline M.
Baskı/Yayın Bilgisi 2014

Rapid and Efficient Purification of Drosophila Homeodomain Transcription Factors for Biophysical Characterization

Yazar: Orlomoski, Rachel, Bogle, Aaron, Loss, Jeanmarie, Simons, Rylee, Dresch, Jacqueline M., Drewell, Robert A., Spratt, Donald E.
Yayımlandı Protein Expr Purif (2019)