The folded k-spectrum kernel: A machine learning approach to detecting transcription factor binding sites with gapped nucleotide dependencies

Por Elmas, Abdulkadir, Wang, Xiaodong, Dresch, Jacqueline M.
Publicado no PLoS One (2017)

MARZ: an algorithm to combinatorially analyze gapped n-mer models of transcription factor binding

Por Zellers, Rowan G, Drewell, Robert A, Dresch, Jacqueline M
Publicado no BMC Bioinformatics (2015)

Spatial distribution of predicted transcription factor binding sites in Drosophila ChIP peaks

Por Pettie, Kade P., Dresch, Jacqueline M., Drewell, Robert A.
Publicado no Mech Dev (2016)

Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effects

Por Dresch, Jacqueline M, Liu, Xiaozhou, Arnosti, David N, Ay, Ahmet
Publicado em 2010

Global sensitivity analysis of a dynamic model for gene expression in Drosophila embryos

Por McCarthy, Gregory D., Drewell, Robert A., Dresch, Jacqueline M.
Publicado no PeerJ (2015)

Flanking sequence context-dependent transcription factor binding in early Drosophila development

Por Stringham, Jessica L, Brown, Adam S, Drewell, Robert A, Dresch, Jacqueline M
Publicado em 2013

TWO-LAYER MATHEMATICAL MODELING OF GENE EXPRESSION: INCORPORATING DNA-LEVEL INFORMATION AND SYSTEM DYNAMICS()

Por DRESCH, JACQUELINE M., THOMPSON, MARC A., ARNOSTI, DAVID N., CHIU, CHICHIA
Publicado em 2013

Nucleotide Interdependency in Transcription Factor Binding Sites in the Drosophila Genome

Por Dresch, Jacqueline M., Zellers, Rowan G., Bork, Daniel K., Drewell, Robert A.
Publicado no Gene Regul Syst Bio (2016)

Quantitative perturbation-based analysis of gene expression predicts enhancer activity in early Drosophila embryo

Por Sayal, Rupinder, Dresch, Jacqueline M, Pushel, Irina, Taylor, Benjamin R, Arnosti, David N
Publicado no eLife (2016)

Deciphering the combinatorial architecture of a Drosophila homeotic gene enhancer

Por Drewell, Robert A., Nevarez, Michael J., Kurata, Jessica S., Winkler, Lauren N., Li, Lily, Dresch, Jacqueline M.
Publicado em 2014

Rapid and Efficient Purification of Drosophila Homeodomain Transcription Factors for Biophysical Characterization

Por Orlomoski, Rachel, Bogle, Aaron, Loss, Jeanmarie, Simons, Rylee, Dresch, Jacqueline M., Drewell, Robert A., Spratt, Donald E.
Publicado no Protein Expr Purif (2019)