The folded k-spectrum kernel: A machine learning approach to detecting transcription factor binding sites with gapped nucleotide dependencies

by Elmas, Abdulkadir, Wang, Xiaodong, Dresch, Jacqueline M.
Published in PLoS One (2017)

MARZ: an algorithm to combinatorially analyze gapped n-mer models of transcription factor binding

by Zellers, Rowan G, Drewell, Robert A, Dresch, Jacqueline M
Published in BMC Bioinformatics (2015)

Spatial distribution of predicted transcription factor binding sites in Drosophila ChIP peaks

by Pettie, Kade P., Dresch, Jacqueline M., Drewell, Robert A.
Published in Mech Dev (2016)

Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effects

by Dresch, Jacqueline M, Liu, Xiaozhou, Arnosti, David N, Ay, Ahmet
Published 2010

Global sensitivity analysis of a dynamic model for gene expression in Drosophila embryos

by McCarthy, Gregory D., Drewell, Robert A., Dresch, Jacqueline M.
Published in PeerJ (2015)

Flanking sequence context-dependent transcription factor binding in early Drosophila development

by Stringham, Jessica L, Brown, Adam S, Drewell, Robert A, Dresch, Jacqueline M
Published 2013

TWO-LAYER MATHEMATICAL MODELING OF GENE EXPRESSION: INCORPORATING DNA-LEVEL INFORMATION AND SYSTEM DYNAMICS()

by DRESCH, JACQUELINE M., THOMPSON, MARC A., ARNOSTI, DAVID N., CHIU, CHICHIA
Published 2013

Nucleotide Interdependency in Transcription Factor Binding Sites in the Drosophila Genome

by Dresch, Jacqueline M., Zellers, Rowan G., Bork, Daniel K., Drewell, Robert A.
Published in Gene Regul Syst Bio (2016)

Quantitative perturbation-based analysis of gene expression predicts enhancer activity in early Drosophila embryo

by Sayal, Rupinder, Dresch, Jacqueline M, Pushel, Irina, Taylor, Benjamin R, Arnosti, David N
Published in eLife (2016)

Deciphering the combinatorial architecture of a Drosophila homeotic gene enhancer

by Drewell, Robert A., Nevarez, Michael J., Kurata, Jessica S., Winkler, Lauren N., Li, Lily, Dresch, Jacqueline M.
Published 2014

Rapid and Efficient Purification of Drosophila Homeodomain Transcription Factors for Biophysical Characterization

by Orlomoski, Rachel, Bogle, Aaron, Loss, Jeanmarie, Simons, Rylee, Dresch, Jacqueline M., Drewell, Robert A., Spratt, Donald E.
Published in Protein Expr Purif (2019)