The folded k-spectrum kernel: A machine learning approach to detecting transcription factor binding sites with gapped nucleotide dependencies

بواسطة Elmas, Abdulkadir, Wang, Xiaodong, Dresch, Jacqueline M.
الحاوية / القاعدة PLoS One (2017)

MARZ: an algorithm to combinatorially analyze gapped n-mer models of transcription factor binding

بواسطة Zellers, Rowan G, Drewell, Robert A, Dresch, Jacqueline M
الحاوية / القاعدة BMC Bioinformatics (2015)

Spatial distribution of predicted transcription factor binding sites in Drosophila ChIP peaks

بواسطة Pettie, Kade P., Dresch, Jacqueline M., Drewell, Robert A.
الحاوية / القاعدة Mech Dev (2016)

Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effects

بواسطة Dresch, Jacqueline M, Liu, Xiaozhou, Arnosti, David N, Ay, Ahmet
منشور في 2010

Global sensitivity analysis of a dynamic model for gene expression in Drosophila embryos

بواسطة McCarthy, Gregory D., Drewell, Robert A., Dresch, Jacqueline M.
الحاوية / القاعدة PeerJ (2015)

Flanking sequence context-dependent transcription factor binding in early Drosophila development

بواسطة Stringham, Jessica L, Brown, Adam S, Drewell, Robert A, Dresch, Jacqueline M
منشور في 2013

TWO-LAYER MATHEMATICAL MODELING OF GENE EXPRESSION: INCORPORATING DNA-LEVEL INFORMATION AND SYSTEM DYNAMICS()

بواسطة DRESCH, JACQUELINE M., THOMPSON, MARC A., ARNOSTI, DAVID N., CHIU, CHICHIA
منشور في 2013

Nucleotide Interdependency in Transcription Factor Binding Sites in the Drosophila Genome

بواسطة Dresch, Jacqueline M., Zellers, Rowan G., Bork, Daniel K., Drewell, Robert A.
الحاوية / القاعدة Gene Regul Syst Bio (2016)

Quantitative perturbation-based analysis of gene expression predicts enhancer activity in early Drosophila embryo

بواسطة Sayal, Rupinder, Dresch, Jacqueline M, Pushel, Irina, Taylor, Benjamin R, Arnosti, David N
الحاوية / القاعدة eLife (2016)

Deciphering the combinatorial architecture of a Drosophila homeotic gene enhancer

بواسطة Drewell, Robert A., Nevarez, Michael J., Kurata, Jessica S., Winkler, Lauren N., Li, Lily, Dresch, Jacqueline M.
منشور في 2014

Rapid and Efficient Purification of Drosophila Homeodomain Transcription Factors for Biophysical Characterization

بواسطة Orlomoski, Rachel, Bogle, Aaron, Loss, Jeanmarie, Simons, Rylee, Dresch, Jacqueline M., Drewell, Robert A., Spratt, Donald E.
الحاوية / القاعدة Protein Expr Purif (2019)