On the use of cartographic projections in visualizing phylo-genetic tree space

Por Sundberg, Kenneth, Clement, Mark, Snell, Quinn
Publicado em 2010

Analysis of long branch extraction and long branch shortening

Por O’Connor, Timothy, Sundberg, Kenneth, Carroll, Hyrum, Clement, Mark, Snell, Quinn
Publicado em 2010

Parallel Mapping Approaches for GNUMAP

Por Clement, Nathan L., Clement, Mark J., Snell, Quinn, Johnson, W. Evan
Publicado em 2011

Phylogenetic search through partial tree mixing

Por Sundberg, Kenneth, Clement, Mark, Snell, Quinn, Ventura, Dan, Whiting, Michael, Crandall, Keith
Publicado em 2012

Probabilistic inference and ranking of gene regulatory pathways as a shortest-path problem

Por Jensen, James D, Jensen, Daniel M, Clement, Mark J, Snell, Quinn O
Publicado em 2013

Effects of error-correction of heterozygous next-generation sequencing data

Por Fujimoto, M Stanley, Bodily, Paul M, Okuda, Nozomu, Clement, Mark J, Snell, Quinn
Publicado em 2014

Transcriptome assembly, profiling and differential gene expression analysis of the halophyte Suaeda fruticosa provides insights into salt tolerance

Por Diray-Arce, Joann, Clement, Mark, Gul, Bilquees, Khan, M Ajmal, Nielsen, Brent L
Publicado no BMC Genomics (2015)

ScaffoldScaffolder: solving contig orientation via bidirected to directed graph reduction

Por Bodily, Paul M., Fujimoto, M. Stanley, Snell, Quinn, Ventura, Dan, Clement, Mark J.
Publicado no Bioinformatics (2016)

Detecting false positive sequence homology: a machine learning approach

Por Fujimoto, M. Stanley, Suvorov, Anton, Jensen, Nicholas O., Clement, Mark J., Bybee, Seth M.
Publicado no BMC Bioinformatics (2016)

Inferring gene regulatory networks from asynchronous microarray data with AIRnet

Por Oviatt, David, Clement, Mark, Snell, Quinn, Sundberg, Kenneth, Lai, Chun Wan J, Allen, Jared, Roper, Randall
Publicado em 2010

A novel approach for multi-SNP GWAS and its application in Alzheimer’s disease

Por Bodily, Paul M., Fujimoto, M. Stanley, Page, Justin T., Clement, Mark J., Ebbert, Mark T. W., Ridge, Perry G.
Publicado no BMC Bioinformatics (2016)

Heterozygous genome assembly via binary classification of homologous sequence

Por Bodily, Paul M, Fujimoto, M Stanley, Ortega, Cameron, Okuda, Nozomu, Price, Jared C, Clement, Mark J, Snell, Quinn
Publicado no BMC Bioinformatics (2015)

Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data

Por Hong, Changjin, Clement, Nathan L, Clement, Spencer, Hammoud, Saher Sue, Carrell, Douglas T, Cairns, Bradley R, Snell, Quinn, Clement, Mark J, Johnson, William Evan
Publicado em 2013

Rhizobial Plasmids That Cause Impaired Symbiotic Nitrogen Fixation and Enhanced Host Invasion

Por Crook, Matthew B., Lindsay, Daniel P., Biggs, Matthew B., Bentley, Joshua S., Price, Jared C., Clement, Spencer C., Clement, Mark J., Long, Sharon R., Griffitts, Joel S.
Publicado no Mol Plant Microbe Interact (2012)

Targeted Amplicon Sequencing (TAS): A Scalable Next-Gen Approach to Multilocus, Multitaxa Phylogenetics

Por Bybee, Seth M., Bracken-Grissom, Heather, Haynes, Benjamin D., Hermansen, Russell A., Byers, Robert L., Clement, Mark J., Udall, Joshua A., Wilcox, Edward R., Crandall, Keith A.
Publicado em 2011

Pathoscope: Species identification and strain attribution with unassembled sequencing data

Por Francis, Owen E., Bendall, Matthew, Manimaran, Solaiappan, Hong, Changjin, Clement, Nathan L., Castro-Nallar, Eduardo, Snell, Quinn, Schaalje, G. Bruce, Clement, Mark J., Crandall, Keith A., Johnson, W. Evan
Publicado em 2013

Non-trisomic Homeobox Gene Expression during Craniofacial Development in the Ts65Dn Mouse Model of Down Syndrome

Por Billingsley, Cherie N., Allen, Jared R., Baumann, Douglas D., Deitz, Samantha L., Blazek, Joshua D., Newbauer, Abby, Darrah, Andrew, Long, Brad C., Young, Brandon, Clement, Mark, Doerge, R.W., Roper, Randall J.
Publicado em 2013

Exome Sequencing and Unrelated Findings in the Context of Complex Disease Research: Ethical and Clinical Implications

Por Lyon, Gholson J., Jiang, Tao, Van Wijk, Richard, Wang, Wei, Bodily, Paul Mark, Xing, Jinchuan, Tian, Lifeng, Robison, Reid J., Clement, Mark, Lin, Yang, Zhang, Peng, Liu, Ying, Moore, Barry, Glessner, Joseph T., Elia, Josephine, Reimherr, Fred, van Solinge, Wouter W., Yandell, Mark, Hakonarson, Hakon, Wang, Jun, Johnson, William Evan, Wei, Zhi, Wang, Kai
Publicado em 2011

Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimal Information about a Phylogenetic Analysis (MIAPA)

Por LEEBENS-MACK, JIM, VISION, TODD, BRENNER, ERIC, BOWERS, JOHN E., CANNON, STEVEN, CLEMENT, MARK J., CUNNINGHAM, CLIFFORD W., dePAMPHILIS, CLAUDE, deSALLE, ROB, DOYLE, JEFF J., EISEN, JONATHAN A., GU, XUN, HARSHMAN, JOHN, JANSEN, ROBERT K., KELLOGG, ELIZABETH A., KOONIN, EUGENE V., MISHLER, BRENT D., PHILIPPE, HERVÉ, PIRES, J. CHRIS, QIU, YIN-LONG, RHEE, SEUNG Y., SJÖLANDER, KIMMEN, SOLTIS, DOUGLAS E., SOLTIS, PAMELA S., STEVENSON, DENNIS W., WALL, KERR, WARNOW, TANDY, ZMASEK, CHRISTIAN
Publicado em 2006