PathoQC: Computationally Efficient Read Preprocessing and Quality Control for High-Throughput Sequencing Data Sets

Por Hong, Changjin, Manimaran, Solaiappan, Johnson, William Evan
Publicado no Cancer Inform (2015)

PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples

Por Hong, Changjin, Manimaran, Solaiappan, Shen, Ying, Perez-Rogers, Joseph F, Byrd, Allyson L, Castro-Nallar, Eduardo, Crandall, Keith A, Johnson, William Evan
Publicado em 2014

Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data

Por Hong, Changjin, Clement, Nathan L, Clement, Spencer, Hammoud, Saher Sue, Carrell, Douglas T, Cairns, Bradley R, Snell, Quinn, Clement, Mark J, Johnson, William Evan
Publicado em 2013

Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data

Por Byrd, Allyson L, Perez-Rogers, Joseph F, Manimaran, Solaiappan, Castro-Nallar, Eduardo, Toma, Ian, McCaffrey, Tim, Siegel, Marc, Benson, Gary, Crandall, Keith A, Johnson, William Evan
Publicado em 2014

Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility

Por Piccolo, Stephen R, Hoffman, Laura M, Conner, Thomas, Shrestha, Gajendra, Cohen, Adam L, Marks, Jeffrey R, Neumayer, Leigh A, Agarwal, Cori A, Beckerle, Mary C, Andrulis, Irene L, Spira, Avrum E, Moos, Philip J, Buys, Saundra S, Johnson, William Evan, Bild, Andrea H
Publicado no Mol Syst Biol (2016)

Exome Sequencing and Unrelated Findings in the Context of Complex Disease Research: Ethical and Clinical Implications

Por Lyon, Gholson J., Jiang, Tao, Van Wijk, Richard, Wang, Wei, Bodily, Paul Mark, Xing, Jinchuan, Tian, Lifeng, Robison, Reid J., Clement, Mark, Lin, Yang, Zhang, Peng, Liu, Ying, Moore, Barry, Glessner, Joseph T., Elia, Josephine, Reimherr, Fred, van Solinge, Wouter W., Yandell, Mark, Hakonarson, Hakon, Wang, Jun, Johnson, William Evan, Wei, Zhi, Wang, Kai
Publicado em 2011