Caspase cleavage sites in the human proteome: CaspDB, a database of predicted substrates

di Cieplak, Piotr
Pubblicato in Apoptosis (2015)

Familiar Faces

di Cieplak, Piotr
Pubblicazione 2022

CaspNeuroD: a knowledgebase of predicted caspase cleavage sites in human proteins related to neurodegenerative diseases

di Kumar, Sonu, Cieplak, Piotr
Pubblicato in Database (Oxford) (2016)

Role of N-glycosylation in activation of proMMP-9. A molecular dynamics simulations study

di Kumar, Sonu, Cieplak, Piotr
Pubblicato in PLoS One (2018)

Free Energy Profile of RNA Hairpins: A Molecular Dynamics Simulation Study

di Deng, Nan-Jie, Cieplak, Piotr
Pubblicazione 2010

Insights into affinity and specificity in the complexes of α-lytic protease and its inhibitor proteins: binding free energy from molecular dynamics simulation

di Deng, Nan-Jie, Cieplak, Piotr
Pubblicazione 2009

Matrix metalloproteinases – from the cleavage data to the prediction tools and beyond

di Cieplak, Piotr, Strongin, Alex Y
Pubblicato in Biochim Biophys Acta (2017)

High Throughput Substrate Phage Display for Protease Profiling

di Ratnikov, Boris, Cieplak, Piotr, Smith, Jeffrey W.
Pubblicazione 2009

Mechanism of influence of phosphorylation on serine 124 on a decrease of catalytic activity of human thymidylate synthase

di Jarmuła, Adam, Frączyk, Tomasz, Cieplak, Piotr, Rode, Wojciech
Pubblicazione 2010

Development of Polarizable Gaussian Model for Molecular Mechanical Calculations I: Atomic Polarizability Parameterization to Reproduce Ab Initio Anisotropy

di Wang, Junmei, Cieplak, Piotr, Luo, Ray, Duan, Yong
Pubblicato in J Chem Theory Comput (2019)

Determining the atomic charge of calcium ion requires the information of its coordination geometry in an EF-hand motif

di Zhang, Pengzhi, Han, Jaebeom, Cieplak, Piotr, Cheung, Margaret. S.
Pubblicato in J Chem Phys (2021)

Molecular Basis for the Cu(2+) Binding-Induced Destabilization of β2-Microglobulin Revealed by Molecular Dynamics Simulation

di Deng, Nan-Jie, Yan, Lisa, Singh, Deepak, Cieplak, Piotr
Pubblicazione 2006

Polarization effects in molecular mechanical force fields

di Cieplak, Piotr, Dupradeau, François-Yves, Duan, Yong, Wang, Junmei
Pubblicazione 2009

Elucidating the Energetics of Entropically Driven Protein–Ligand Association: Calculations of Absolute Binding Free Energy and Entropy

di Deng, Nan-jie, Zhang, Peng, Cieplak, Piotr, Lai, Luhua
Pubblicazione 2011

Caspase Cleavage Sites in the Human Proteome: CaspDB, a Database of Predicted Substrates

di Kumar, Sonu, van Raam, Bram J., Salvesen, Guy S., Cieplak, Piotr
Pubblicazione 2014

Resolving the Ligand Binding Specificity in c-MYC G-quadruplex DNA: Absolute Binding Free Energy Calculations and SPR Experiment

di Deng, Nanjie, Wickstrom, Lauren, Cieplak, Piotr, Lin, Clement, Yang, Danzhou
Pubblicato in J Phys Chem B (2017)

Peptide Sequence Region That is Essential for the Interactions of the Enterotoxigenic Bacteroides fragilis Metalloproteinase II with E-cadherin

di Shiryaev, Sergey A., Remacle, Albert G., Cieplak, Piotr, Strongin, Alex Y.
Pubblicato in J Proteolysis (2014)

S-Nitrosylation of Drp1 links excessive mitochondrial fission to neuronal injury in neurodegeneration

di Nakamura, Tomohiro, Cieplak, Piotr, Cho, Dong-Hyung, Godzik, Adam, Lipton, Stuart A.
Pubblicazione 2010

Development of Polarizable Models for Molecular Mechanical Calculations I: Parameterization of Atomic Polarizability

di Wang, Junmei, Cieplak, Piotr, Li, Jie, Hou, Tingjun, Luo, Ray, Duan, Yong
Pubblicazione 2011

Efficient formulation of polarizable Gaussian multipole electrostatics for biomolecular simulations

di Wei, Haixin, Qi, Ruxi, Wang, Junmei, Cieplak, Piotr, Duan, Yong, Luo, Ray
Pubblicato in J Chem Phys (2020)