Aberrant DNA methylation defines isoform usage in cancer, with functional implications

Por Chen, Yun-Ching, Elnitski, Laura
Publicado no PLoS Comput Biol (2019)

Significant associations between driver gene mutations and DNA methylation alterations across many cancer types

Por Chen, Yun-Ching, Gotea, Valer, Margolin, Gennady, Elnitski, Laura
Publicado no PLoS Comput Biol (2017)

Biodegradable Calcium Phosphate Nanoparticle with Lipid Coating for Systemic siRNA Delivery

Por Li, Jun, Chen, Yun-Ching, Tseng, Yu-Cheng, Huang, Leaf
Publicado em 2009

CpG island methylator phenotype in adenocarcinomas from the digestive tract: Methods, conclusions, and controversies

Por Sánchez-Vega, Francisco, Gotea, Valer, Chen, Yun-Ching, Elnitski, Laura
Publicado no World J Gastrointest Oncol (2017)

Tumor-targeted Delivery of siRNA by Self-assembled Nanoparticles

Por Li, Shyh-Dar, Chen, Yun-Ching, Hackett, Michael J, Huang, Leaf
Publicado em 2007

Molecular Mimicry of Human Endothelial Cell Antigen by Autoantibodies to Nonstructural Protein 1 of Dengue Virus

Por Liu, I-Ju, Chiu, Chien-Yu, Chen, Yun-Ching, Wu, Han-Chung
Publicado em 2011

Network Analysis and Transcriptome Profiling Identify Autophagic and Mitochondrial Dysfunctions in SARS-CoV-2 Infection

Por Singh, Komudi, Chen, Yun-Ching, Judy, Jennifer T, Seifuddin, Fayaz, Tunc, Ilker, Pirooznia, Mehdi
Publicado no bioRxiv (2020)

Exonic DNA Sequencing of ERBB4 in Bipolar Disorder

Por Goes, Fernando S., Rongione, Michael, Chen, Yun-Ching, Karchin, Rachel, Elhaik, Eran, Potash, James B.
Publicado em 2011

IKAP—Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis

Por Chen, Yun-Ching, Suresh, Abhilash, Underbayev, Chingiz, Sun, Clare, Singh, Komudi, Seifuddin, Fayaz, Wiestner, Adrian, Pirooznia, Mehdi
Publicado no Gigascience (2019)

Generation and Characterization of Monoclonal Antibodies against Dengue Virus Type 1 for Epitope Mapping and Serological Detection by Epitope-Based Peptide Antigens

Por Chen, Yun-Ching, Huang, Hsien-Neng, Lin, Chin-Tarng, Chen, Yi-Fang, King, Chwan-Chuen, Wu, Han-Chung
Publicado em 2007

Bio301: A Web-Based EST Annotation Pipeline That Facilitates Functional Comparison Studies

Por Chen, Yen-Chen, Chen, Yun-Ching, Lin, Wen-Dar, Hsiao, Chung-Der, Chiu, Hung-Wen, Ho, Jan-Ming
Publicado no ISRN Bioinform (2011)

Neuroanatomic, epigenetic, and genetic differences in monozygotic twins discordant for Attention Deficit Hyperactivity Disorder

Por Chen, Yun-Ching, Sudre, Gustavo, Sharp, Wendy, Donovan, Frank, Chandrasekharappa, Settara C., Hansen, Nancy, Elnitski, Laura, Shaw, Philip
Publicado no Mol Psychiatry (2017)

Misregulation of ELK1, AP1, and E12 Transcription Factor Networks Is Associated with Melanoma Progression

Por Singh, Komudi, Baird, Michelle, Fischer, Robert, Chaitankar, Vijender, Seifuddin, Fayaz, Chen, Yun-Ching, Tunc, Ilker, Waterman, Clare M., Pirooznia, Mehdi
Publicado no Cancers (Basel) (2020)

Affected Sib-Pair Analyses Identify Signaling Networks Associated With Social Behavioral Deficits in Autism

Por Pirooznia, Mehdi, Niranjan, Tejasvi, Chen, Yun-Ching, Tunc, Ilker, Goes, Fernando S., Avramopoulos, Dimitrios, Potash, James B., Huganir, Richard L., Zandi, Peter P., Wang, Tao
Publicado no Front Genet (2019)

A Hybrid Likelihood Model for Sequence-Based Disease Association Studies

Por Chen, Yun-Ching, Carter, Hannah, Parla, Jennifer, Kramer, Melissa, Goes, Fernando S., Pirooznia, Mehdi, Zandi, Peter P., McCombie, W. Richard, Potash, James B., Karchin, Rachel
Publicado em 2013

A Probabilistic Model to Predict Clinical Phenotypic Traits from Genome Sequencing

Por Chen, Yun-Ching, Douville, Christopher, Wang, Cheng, Niknafs, Noushin, Yeo, Grace, Beleva-Guthrie, Violeta, Carter, Hannah, Stenson, Peter D., Cooper, David N., Li, Biao, Mooney, Sean, Karchin, Rachel
Publicado em 2014

High density lipoprotein proteome is associated with cardiovascular risk factors and atherosclerosis burden as evaluated by coronary CT angiography

Por Gordon, Scott M., Chung, Jonathan H., Playford, Martin P., Dey, Amit K., Sviridov, Denis, Seifuddin, Fayaz, Chen, Yun-Ching, Pirooznia, Mehdi, Chen, Marcus Y., Mehta, Nehal N., Remaley, Alan T.
Publicado no Atherosclerosis (2018)

Human retinoic acid-regulated CD161(+) regulatory T cells support wound repair in intestinal mucosa

Por Povoleri, Giovanni AM, Nova-Lamperti, Estefania, Scottà, Cristiano, Fanelli, Giorgia, Chen, Yun-Ching, Becker, Pablo, Boardman, Dominic, Costantini, Benedetta, Romano, Marco, Pavlidis, Polychronis, McGregor, Reuben, Pantazi, Eirini, Chauss, Daniel, Sun, Hong-Wei, Shih, Han-Yu, Cousins, David, Cooper, Nichola, Powell, Nick, Kemper, Claudia, Pirooznia, Mehdi, Laurence, Arian, Kordasti, Shahram, Kazemian, Majid, Lombardi, Giovanna, Afzali, Behdad
Publicado no Nat Immunol (2018)

Exome Sequencing of Familial Bipolar Disorder

Por Goes, Fernando S., Pirooznia, Mehdi, Parla, Jennifer S., Kramer, Melissa, Ghiban, Elena, Mavruk, Senem, Chen, Yun-Ching, Monson, Eric T., Willour, Virginia L., Karchin, Rachel, Flickinger, Matthew, Locke, Adam E., Levy, Shawn E., Scott, Laura J., Boehnke, Michael, Stahl, Eli, Moran, Jennifer L., Hultman, Christina M., Landén, Mikael, Purcell, Shaun M., Sklar, Pamela, Zandi, Peter P., McCombie, W. Richard, Potash, James B.
Publicado no JAMA Psychiatry (2016)

Matching phenotypes to whole genomes: Lessons learned from four iterations of the personal genome project community challenges

Por Cai, Binghuang, Li, Biao, Kiga, Nikki, Thusberg, Janita, Bergquist, Timothy, Chen, Yun-Ching, Niknafs, Noushin, Carter, Hannah, Tokheim, Collin, Beleva-Guthrie, Violeta, Douville, Christopher, Bhattacharya, Rohit, Yeo, Hui Ting Grace, Fan, Jean, Sengupta, Sohini, Kim, Dewey, Cline, Melissa, Turner, Tychele, Diekhans, Mark, Zaucha, Jan, Pal, Lipika R., Cao, Chen, Yu, Chen-Hsin, Yin, Yizhou, Carraro, Marco, Giollo, Manuel, Ferrari, Carlo, Leonardi, Emanuela, Tosatto, Silvio C.E., Bobe, Jason, Ball, Madeleine, Hoskins, Roger A., Repo, Susanna, Church, George, Brenner, Steven E., Moult, John, Gough, Julian, Stanke, Mario, Karchin, Rachel, Mooney, Sean D.
Publicado no Hum Mutat (2017)