The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

Por Mavromatis, Konstantinos, Ivanova, Natalia N., Chen, I-Min A., Szeto, Ernest, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado em 2009

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

Por Liolios, Konstantinos, Chen, I-Min A., Mavromatis, Konstantinos, Tavernarakis, Nektarios, Hugenholtz, Philip, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado em 2010

Improving Microbial Genome Annotations in an Integrated Database Context

Por Chen, I-Min A., Markowitz, Victor M., Chu, Ken, Anderson, Iain, Mavromatis, Konstantinos, Kyrpides, Nikos C., Ivanova, Natalia N.
Publicado em 2013

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata

Por Pagani, Ioanna, Liolios, Konstantinos, Jansson, Jakob, Chen, I-Min A., Smirnova, Tatyana, Nosrat, Bahador, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado em 2012

IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes

Por Hadjithomas, Michalis, Chen, I-Min A., Chu, Ken, Huang, Jinghua, Ratner, Anna, Palaniappan, Krishna, Andersen, Evan, Markowitz, Victor, Kyrpides, Nikos C., Ivanova, Natalia N.
Publicado no Nucleic Acids Res (2017)

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions

Por Markowitz, Victor M., Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Chu, Ken, Chen, I-Min A., Dubchak, Inna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado em 2008

The integrated microbial genomes system: an expanding comparative analysis resource

Por Markowitz, Victor M., Chen, I-Min A., Palaniappan, Krishna, Chu, Ken, Szeto, Ernest, Grechkin, Yuri, Ratner, Anna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado em 2010

IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project

Por Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Jacob, Biju, Ratner, Anna, Liolios, Konstantinos, Pagani, Ioanna, Huntemann, Marcel, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado em 2012

IMG/M: a data management and analysis system for metagenomes

Por Markowitz, Victor M., Ivanova, Natalia N., Szeto, Ernest, Palaniappan, Krishna, Chu, Ken, Dalevi, Daniel, Chen, I-Min A., Grechkin, Yuri, Dubchak, Inna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Hugenholtz, Philip, Kyrpides, Nikos C.
Publicado em 2008

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

Por Huntemann, Marcel, Ivanova, Natalia N., Mavromatis, Konstantinos, Tripp, H. James, Paez-Espino, David, Palaniappan, Krishnaveni, Szeto, Ernest, Pillay, Manoj, Chen, I-Min A., Pati, Amrita, Nielsen, Torben, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado no Stand Genomic Sci (2015)

Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

Por Huntemann, Marcel, Ivanova, Natalia N., Mavromatis, Konstantinos, Tripp, H. James, Paez-Espino, David, Palaniappan, Krishnaveni, Szeto, Ernest, Pillay, Manoj, Chen, I-Min A., Pati, Amrita, Nielsen, Torben, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado no Stand Genomic Sci (2016)

Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system

Por Chen, I-Min A., Markowitz, Victor M., Palaniappan, Krishna, Szeto, Ernest, Chu, Ken, Huang, Jinghua, Ratner, Anna, Pillay, Manoj, Hadjithomas, Michalis, Huntemann, Marcel, Mikhailova, Natalia, Ovchinnikova, Galina, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado no BMC Genomics (2016)

IMG: the integrated microbial genomes database and comparative analysis system

Por Markowitz, Victor M., Chen, I-Min A., Palaniappan, Krishna, Chu, Ken, Szeto, Ernest, Grechkin, Yuri, Ratner, Anna, Jacob, Biju, Huang, Jinghua, Williams, Peter, Huntemann, Marcel, Anderson, Iain, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado em 2012

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)

Por Huntemann, Marcel, Ivanova, Natalia N., Mavromatis, Konstantinos, Tripp, H. James, Paez-Espino, David, Tennessen, Kristin, Palaniappan, Krishnaveni, Szeto, Ernest, Pillay, Manoj, Chen, I-Min A., Pati, Amrita, Nielsen, Torben, Markowitz, Victor M., Kyrpides, Nikos C.
Publicado no Stand Genomic Sci (2016)

IMG/M: the integrated metagenome data management and comparative analysis system

Por Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Ratner, Anna, Jacob, Biju, Pati, Amrita, Huntemann, Marcel, Liolios, Konstantinos, Pagani, Ioanna, Anderson, Iain, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado em 2012

IMG/M: integrated genome and metagenome comparative data analysis system

Por Chen, I-Min A., Markowitz, Victor M., Chu, Ken, Palaniappan, Krishna, Szeto, Ernest, Pillay, Manoj, Ratner, Anna, Huang, Jinghua, Andersen, Evan, Huntemann, Marcel, Varghese, Neha, Hadjithomas, Michalis, Tennessen, Kristin, Nielsen, Torben, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado no Nucleic Acids Res (2017)

IMG 4 version of the integrated microbial genomes comparative analysis system

Por Markowitz, Victor M., Chen, I-Min A., Palaniappan, Krishna, Chu, Ken, Szeto, Ernest, Pillay, Manoj, Ratner, Anna, Huang, Jinghua, Woyke, Tanja, Huntemann, Marcel, Anderson, Iain, Billis, Konstantinos, Varghese, Neha, Mavromatis, Konstantinos, Pati, Amrita, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado em 2014

IMG/M 4 version of the integrated metagenome comparative analysis system

Por Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Pillay, Manoj, Ratner, Anna, Huang, Jinghua, Pagani, Ioanna, Tringe, Susannah, Huntemann, Marcel, Billis, Konstantinos, Varghese, Neha, Tennessen, Kristin, Mavromatis, Konstantinos, Pati, Amrita, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado em 2014

Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and “Thermoanaerobacter cellulolyticus”

Por Lee, Laura L., Izquierdo, Javier A., Blumer-Schuette, Sara E., Zurawski, Jeffrey V., Conway, Jonathan M., Cottingham, Robert W., Huntemann, Marcel, Copeland, Alex, Chen, I-Min A., Kyrpides, Nikos, Markowitz, Victor, Palaniappan, Krishnaveni, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Andersen, Evan, Pati, Amrita, Stamatis, Dimitrios, Reddy, T.B.K., Shapiro, Nicole, Nordberg, Henrik P., Cantor, Michael N., Hua, Susan X., Woyke, Tanja, Kelly, Robert M.
Publicado no Genome Announc (2015)

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses

Por Paez-Espino, David, Chen, I.-Min A., Palaniappan, Krishna, Ratner, Anna, Chu, Ken, Szeto, Ernest, Pillay, Manoj, Huang, Jinghua, Markowitz, Victor M., Nielsen, Torben, Huntemann, Marcel, K. Reddy, T. B., Pavlopoulos, Georgios A., Sullivan, Matthew B., Campbell, Barbara J., Chen, Feng, McMahon, Katherine, Hallam, Steve J., Denef, Vincent, Cavicchioli, Ricardo, Caffrey, Sean M., Streit, Wolfgang R., Webster, John, Handley, Kim M., Salekdeh, Ghasem H., Tsesmetzis, Nicolas, Setubal, Joao C., Pope, Phillip B., Liu, Wen-Tso, Rivers, Adam R., Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado no Nucleic Acids Res (2017)