Learning gene regulatory networks from only positive and unlabeled data

gan Elkan Charles, Cerulo Luigi, Ceccarelli Michele
Cyhoeddwyd 2010-05-01

Learning gene regulatory networks from only positive and unlabeled data

gan Cerulo, Luigi, Elkan, Charles, Ceccarelli, Michele
Cyhoeddwyd 2010

A negative selection heuristic to predict new transcriptional targets

gan Cerulo, Luigi, Paduano, Vincenzo, Zoppoli, Pietro, Ceccarelli, Michele
Cyhoeddwyd 2013

A review of COVID-19 biomarkers and drug targets: resources and tools

gan Caruso, Francesca P, Scala, Giovanni, Cerulo, Luigi, Ceccarelli, Michele
Cyhoeddwyd yn Brief Bioinform (2020)

Detection of statistically significant network changes in complex biological networks

gan Mall, Raghvendra, Cerulo, Luigi, Bensmail, Halima, Iavarone, Antonio, Ceccarelli, Michele
Cyhoeddwyd yn BMC Syst Biol (2017)

Deep learning predicts short non-coding RNA functions from only raw sequence data

gan Noviello, Teresa Maria Rosaria, Ceccarelli, Francesco, Ceccarelli, Michele, Cerulo, Luigi
Cyhoeddwyd yn PLoS Comput Biol (2020)

Centrosome Dynamics and Its Role in Inflammatory Response and Metastatic Process

gan Pancione, Massimo, Cerulo, Luigi, Remo, Andrea, Giordano, Guido, Gutierrez-Uzquiza, Álvaro, Bragado, Paloma, Porras, Almudena
Cyhoeddwyd yn Biomolecules (2021)

Identification of long non-coding transcripts with feature selection: a comparative study

gan Ventola, Giovanna M. M., Noviello, Teresa M. R., D’Aniello, Salvatore, Spagnuolo, Antonietta, Ceccarelli, Michele, Cerulo, Luigi
Cyhoeddwyd yn BMC Bioinformatics (2017)

Identification of a Novel Gene Signature of ES Cells Self-Renewal Fluctuation through System-Wide Analysis

gan Cerulo, Luigi, Tagliaferri, Daniela, Marotta, Pina, Zoppoli, Pietro, Russo, Filomena, Mazio, Claudia, DeFelice, Mario, Ceccarelli, Michele, Falco, Geppino
Cyhoeddwyd 2014

Detection of long non–coding RNA homology, a comparative study on alignment and alignment–free metrics

gan Noviello, Teresa M. R., Di Liddo, Antonella, Ventola, Giovanna M., Spagnuolo, Antonietta, D’Aniello, Salvatore, Ceccarelli, Michele, Cerulo, Luigi
Cyhoeddwyd yn BMC Bioinformatics (2018)

RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes

gan Mall, Raghvendra, Cerulo, Luigi, Garofano, Luciano, Frattini, Veronique, Kunji, Khalid, Bensmail, Halima, Sabedot, Thais S, Noushmehr, Houtan, Lasorella, Anna, Iavarone, Antonio, Ceccarelli, Michele
Cyhoeddwyd yn Nucleic Acids Res (2018)

Ensemble of Gene Signatures Identifies Novel Biomarkers in Colorectal Cancer Activated through PPARγ and TNFα Signaling

gan Pagnotta, Stefano Maria, Laudanna, Carmelo, Pancione, Massimo, Sabatino, Lina, Votino, Carolina, Remo, Andrea, Cerulo, Luigi, Zoppoli, Pietro, Manfrin, Erminia, Colantuoni, Vittorio, Ceccarelli, Michele
Cyhoeddwyd 2013

Systems biology analysis of gene expression data and gene network reverse-engineering approaches reveal NFAT5 as a candidate biomarker in Inflammatory Breast Cancer

gan Remo, Andrea, Simeone, Ines, Pancione, Massimo, Parcesepe, Pietro, Finetti, Pascal, Bensmail, Halima, Cerulo, Luigi, Colantuoni, Vittorio, Birnbaum, Daniel, Bonetti, Franco, Bertucci, Francois, Manfrin, Erminia, Ceccarelli, Michele
Cyhoeddwyd yn J Immunother Cancer (2015)

Systems biology analysis reveals NFAT5 as a novel biomarker and master regulator of inflammatory breast cancer

gan Remo, Andrea, Simeone, Ines, Pancione, Massimo, Parcesepe, Pietro, Finetti, Pascal, Cerulo, Luigi, Bensmail, Halima, Birnbaum, Daniel, Van Laere, Steven J, Colantuoni, Vittorio, Bonetti, Franco, Bertucci, François, Manfrin, Erminia, Ceccarelli, Michele
Cyhoeddwyd yn J Transl Med (2015)

Cancer-related CD15/FUT4 overexpression decreases benefit to agents targeting EGFR or VEGF acting as a novel RAF-MEK-ERK kinase downstream regulator in metastatic colorectal cancer

gan Giordano, Guido, Febbraro, Antonio, Tomaselli, Eugenio, Sarnicola, Maria Lucia, Parcesepe, Pietro, Parente, Domenico, Forte, Nicola, Fabozzi, Alessio, Remo, Andrea, Bonetti, Andrea, Manfrin, Erminia, Ghasemi, Somayehsadat, Ceccarelli, Michele, Cerulo, Luigi, Bazzoni, Flavia, Pancione, Massimo
Cyhoeddwyd yn J Exp Clin Cancer Res (2015)

Retinoic Acid Induces Embryonic Stem Cells (ESCs) Transition to 2 Cell-Like State Through a Coordinated Expression of Dux and Duxbl1

gan Tagliaferri, Daniela, Mazzone, Pellegrino, Noviello, Teresa M. R., Addeo, Martina, Angrisano, Tiziana, Del Vecchio, Luigi, Visconte, Feliciano, Ruggieri, Vitalba, Russi, Sabino, Caivano, Antonella, Cantone, Irene, De Felice, Mario, Ceccarelli, Michele, Cerulo, Luigi, Falco, Geppino
Cyhoeddwyd yn Front Cell Dev Biol (2020)

Identification of genetic determinants of breast cancer immune phenotypes by integrative genome-scale analysis

gan Hendrickx, Wouter, Simeone, Ines, Anjum, Samreen, Mokrab, Younes, Bertucci, François, Finetti, Pascal, Curigliano, Giuseppe, Seliger, Barbara, Cerulo, Luigi, Tomei, Sara, Delogu, Lucia Gemma, Maccalli, Cristina, Wang, Ena, Miller, Lance D., Marincola, Francesco M., Ceccarelli, Michele, Bedognetti, Davide
Cyhoeddwyd yn Oncoimmunology (2017)

JAK/Stat5-mediated subtype-specific lymphocyte antigen 6 complex, locus G6D (LY6G6D) expression drives mismatch repair proficient colorectal cancer

gan Giordano, Guido, Parcesepe, Pietro, D’Andrea, Mario Rosario, Coppola, Luigi, Di Raimo, Tania, Remo, Andrea, Manfrin, Erminia, Fiorini, Claudia, Scarpa, Aldo, Amoreo, Carla Azzurra, Conciatori, Fabiana, Milella, Michele, Caruso, Francesca Pia, Cerulo, Luigi, Porras, Almudena, Pancione, Massimo
Cyhoeddwyd yn J Exp Clin Cancer Res (2019)

A map of tumor–host interactions in glioma at single-cell resolution

gan Caruso, Francesca Pia, Garofano, Luciano, D'Angelo, Fulvio, Yu, Kai, Tang, Fuchou, Yuan, Jinzhou, Zhang, Jing, Cerulo, Luigi, Pagnotta, Stefano M, Bedognetti, Davide, Sims, Peter A, Suvà, Mario, Su, Xiao-Dong, Lasorella, Anna, Iavarone, Antonio, Ceccarelli, Michele
Cyhoeddwyd yn Gigascience (2020)

A metabolic function of FGFR3-TACC3 gene fusions in cancer

gan Frattini, Véronique, Pagnotta, Stefano M., Tala, Fan, Jerry J., Russo, Marco V., Lee, Sang Bae, Garofano, Luciano, Zhang, Jing, Shi, Peiguo, Lewis, Genevieve, Sanson, Heloise, Frederick, Vanessa, Castano, Angelica M., Cerulo, Luigi, Rolland, Delphine C. M., Mall, Raghvendra, Mokhtari, Karima, Elenitoba-Johnson, Kojo S.J., Sanson, Marc, Huang, Xi, Ceccarelli, Michele, Lasorella, Anna, Iavarone, Antonio
Cyhoeddwyd yn Nature (2018)