Machine learning prediction of oncology drug targets based on protein and network properties

by Dezső, Zoltán, Ceccarelli, Michele
Published in BMC Bioinformatics (2020)

Learning gene regulatory networks from only positive and unlabeled data

by Elkan Charles, Cerulo Luigi, Ceccarelli Michele
Published 2010-05-01

IRIS: a method for reverse engineering of regulatory relations in gene networks

by Morganella, Sandro, Zoppoli, Pietro, Ceccarelli, Michele
Published 2009

Learning gene regulatory networks from only positive and unlabeled data

by Cerulo, Luigi, Elkan, Charles, Ceccarelli, Michele
Published 2010

TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach

by Zoppoli, Pietro, Morganella, Sandro, Ceccarelli, Michele
Published 2010

A scale space approach for unsupervised feature selection in mass spectra classification for ovarian cancer detection

by Ceccarelli, Michele, d'Acierno, Antonio, Facchiano, Angelo
Published 2009

A negative selection heuristic to predict new transcriptional targets

by Cerulo, Luigi, Paduano, Vincenzo, Zoppoli, Pietro, Ceccarelli, Michele
Published 2013

Automated Identification and Location Analysis of Marked Stem Cells Colonies in Optical Microscopy Images

by Paduano, Vincenzo, Tagliaferri, Daniela, Falco, Geppino, Ceccarelli, Michele
Published 2013

A review of COVID-19 biomarkers and drug targets: resources and tools

by Caruso, Francesca P, Scala, Giovanni, Cerulo, Luigi, Ceccarelli, Michele
Published in Brief Bioinform (2020)

Detection of statistically significant network changes in complex biological networks

by Mall, Raghvendra, Cerulo, Luigi, Bensmail, Halima, Iavarone, Antonio, Ceccarelli, Michele
Published in BMC Syst Biol (2017)

Deep learning predicts short non-coding RNA functions from only raw sequence data

by Noviello, Teresa Maria Rosaria, Ceccarelli, Francesco, Ceccarelli, Michele, Cerulo, Luigi
Published in PLoS Comput Biol (2020)

VEGAWES: variational segmentation on whole exome sequencing for copy number detection

by Anjum, Samreen, Morganella, Sandro, D’Angelo, Fulvio, Iavarone, Antonio, Ceccarelli, Michele
Published in BMC Bioinformatics (2015)

Structural Model for Recruitment of RIT1 to the LZTR1 E3 Ligase: Evidences from an Integrated Computational Approach

by Paladino, Antonella, D’Angelo, Fulvio, Noviello, Teresa Maria Rosaria, Iavarone, Antonio, Ceccarelli, Michele
Published in J Chem Inf Model (2021)

TRAF7 Protein Promotes Lys-29-linked Polyubiquitination of IκB Kinase (IKKγ)/NF-κB Essential Modulator (NEMO) and p65/RelA Protein and Represses NF-κB Activation

by Zotti, Tiziana, Uva, Antonio, Ferravante, Angela, Vessichelli, Mariangela, Scudiero, Ivan, Ceccarelli, Michele, Vito, Pasquale, Stilo, Romania
Published 2011

Immune Escape Mechanisms in Colorectal Cancer Pathogenesis and Liver Metastasis

by Pancione, Massimo, Giordano, Guido, Remo, Andrea, Febbraro, Antonio, Sabatino, Lina, Manfrin, Erminia, Ceccarelli, Michele, Colantuoni, Vittorio
Published 2014

Toward the identification of genetic determinants of breast cancer immune responsiveness

by Simeone, Ines, Hendrickx, Wouter, Miller, Lance, Bensmail, Halima, Wang, Ena, Marincola, Francesco, Ceccarelli, Michele, Bedognetti, Davide
Published in J Immunother Cancer (2015)

EPIG-14 EPIGENOMIC (DNA METHYLATION AND EXPRESSION) SIGNATURES DEFINE SUBSETS OF BOTH IDHmut AND IDHwt GLIOMA WITH DISTINCT CLINICAL OUTCOMES

by Malta, Tathiane, Sabedot, Thaís, Ceccarelli, Michele, Barthel, Floris, Pagnotta, Stefano, Iavarone, Antonio, Verhaak, Roel, Noushmehr, Houtan
Published in Neuro Oncol (2015)

TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages

by Silva, Tiago C., Colaprico, Antonio, Olsen, Catharina, D'Angelo, Fulvio, Bontempi, Gianluca, Ceccarelli, Michele, Noushmehr, Houtan
Published in F1000Res (2016)

Identification of long non-coding transcripts with feature selection: a comparative study

by Ventola, Giovanna M. M., Noviello, Teresa M. R., D’Aniello, Salvatore, Spagnuolo, Antonietta, Ceccarelli, Michele, Cerulo, Luigi
Published in BMC Bioinformatics (2017)

Identification of a Novel Gene Signature of ES Cells Self-Renewal Fluctuation through System-Wide Analysis

by Cerulo, Luigi, Tagliaferri, Daniela, Marotta, Pina, Zoppoli, Pietro, Russo, Filomena, Mazio, Claudia, DeFelice, Mario, Ceccarelli, Michele, Falco, Geppino
Published 2014