Learning gene regulatory networks from only positive and unlabeled data

by Elkan Charles, Cerulo Luigi, Ceccarelli Michele
Published 2010-05-01

Learning gene regulatory networks from only positive and unlabeled data

by Cerulo, Luigi, Elkan, Charles, Ceccarelli, Michele
Published 2010

A negative selection heuristic to predict new transcriptional targets

by Cerulo, Luigi, Paduano, Vincenzo, Zoppoli, Pietro, Ceccarelli, Michele
Published 2013

A review of COVID-19 biomarkers and drug targets: resources and tools

by Caruso, Francesca P, Scala, Giovanni, Cerulo, Luigi, Ceccarelli, Michele
Published in Brief Bioinform (2020)

Detection of statistically significant network changes in complex biological networks

by Mall, Raghvendra, Cerulo, Luigi, Bensmail, Halima, Iavarone, Antonio, Ceccarelli, Michele
Published in BMC Syst Biol (2017)

Deep learning predicts short non-coding RNA functions from only raw sequence data

by Noviello, Teresa Maria Rosaria, Ceccarelli, Francesco, Ceccarelli, Michele, Cerulo, Luigi
Published in PLoS Comput Biol (2020)

Centrosome Dynamics and Its Role in Inflammatory Response and Metastatic Process

by Pancione, Massimo, Cerulo, Luigi, Remo, Andrea, Giordano, Guido, Gutierrez-Uzquiza, Álvaro, Bragado, Paloma, Porras, Almudena
Published in Biomolecules (2021)

Identification of long non-coding transcripts with feature selection: a comparative study

by Ventola, Giovanna M. M., Noviello, Teresa M. R., D’Aniello, Salvatore, Spagnuolo, Antonietta, Ceccarelli, Michele, Cerulo, Luigi
Published in BMC Bioinformatics (2017)

Identification of a Novel Gene Signature of ES Cells Self-Renewal Fluctuation through System-Wide Analysis

by Cerulo, Luigi, Tagliaferri, Daniela, Marotta, Pina, Zoppoli, Pietro, Russo, Filomena, Mazio, Claudia, DeFelice, Mario, Ceccarelli, Michele, Falco, Geppino
Published 2014

Detection of long non–coding RNA homology, a comparative study on alignment and alignment–free metrics

by Noviello, Teresa M. R., Di Liddo, Antonella, Ventola, Giovanna M., Spagnuolo, Antonietta, D’Aniello, Salvatore, Ceccarelli, Michele, Cerulo, Luigi
Published in BMC Bioinformatics (2018)

RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes

by Mall, Raghvendra, Cerulo, Luigi, Garofano, Luciano, Frattini, Veronique, Kunji, Khalid, Bensmail, Halima, Sabedot, Thais S, Noushmehr, Houtan, Lasorella, Anna, Iavarone, Antonio, Ceccarelli, Michele
Published in Nucleic Acids Res (2018)

Ensemble of Gene Signatures Identifies Novel Biomarkers in Colorectal Cancer Activated through PPARγ and TNFα Signaling

by Pagnotta, Stefano Maria, Laudanna, Carmelo, Pancione, Massimo, Sabatino, Lina, Votino, Carolina, Remo, Andrea, Cerulo, Luigi, Zoppoli, Pietro, Manfrin, Erminia, Colantuoni, Vittorio, Ceccarelli, Michele
Published 2013

Systems biology analysis of gene expression data and gene network reverse-engineering approaches reveal NFAT5 as a candidate biomarker in Inflammatory Breast Cancer

by Remo, Andrea, Simeone, Ines, Pancione, Massimo, Parcesepe, Pietro, Finetti, Pascal, Bensmail, Halima, Cerulo, Luigi, Colantuoni, Vittorio, Birnbaum, Daniel, Bonetti, Franco, Bertucci, Francois, Manfrin, Erminia, Ceccarelli, Michele
Published in J Immunother Cancer (2015)

Systems biology analysis reveals NFAT5 as a novel biomarker and master regulator of inflammatory breast cancer

by Remo, Andrea, Simeone, Ines, Pancione, Massimo, Parcesepe, Pietro, Finetti, Pascal, Cerulo, Luigi, Bensmail, Halima, Birnbaum, Daniel, Van Laere, Steven J, Colantuoni, Vittorio, Bonetti, Franco, Bertucci, François, Manfrin, Erminia, Ceccarelli, Michele
Published in J Transl Med (2015)

Cancer-related CD15/FUT4 overexpression decreases benefit to agents targeting EGFR or VEGF acting as a novel RAF-MEK-ERK kinase downstream regulator in metastatic colorectal cancer

by Giordano, Guido, Febbraro, Antonio, Tomaselli, Eugenio, Sarnicola, Maria Lucia, Parcesepe, Pietro, Parente, Domenico, Forte, Nicola, Fabozzi, Alessio, Remo, Andrea, Bonetti, Andrea, Manfrin, Erminia, Ghasemi, Somayehsadat, Ceccarelli, Michele, Cerulo, Luigi, Bazzoni, Flavia, Pancione, Massimo
Published in J Exp Clin Cancer Res (2015)

Retinoic Acid Induces Embryonic Stem Cells (ESCs) Transition to 2 Cell-Like State Through a Coordinated Expression of Dux and Duxbl1

by Tagliaferri, Daniela, Mazzone, Pellegrino, Noviello, Teresa M. R., Addeo, Martina, Angrisano, Tiziana, Del Vecchio, Luigi, Visconte, Feliciano, Ruggieri, Vitalba, Russi, Sabino, Caivano, Antonella, Cantone, Irene, De Felice, Mario, Ceccarelli, Michele, Cerulo, Luigi, Falco, Geppino
Published in Front Cell Dev Biol (2020)

Identification of genetic determinants of breast cancer immune phenotypes by integrative genome-scale analysis

by Hendrickx, Wouter, Simeone, Ines, Anjum, Samreen, Mokrab, Younes, Bertucci, François, Finetti, Pascal, Curigliano, Giuseppe, Seliger, Barbara, Cerulo, Luigi, Tomei, Sara, Delogu, Lucia Gemma, Maccalli, Cristina, Wang, Ena, Miller, Lance D., Marincola, Francesco M., Ceccarelli, Michele, Bedognetti, Davide
Published in Oncoimmunology (2017)

JAK/Stat5-mediated subtype-specific lymphocyte antigen 6 complex, locus G6D (LY6G6D) expression drives mismatch repair proficient colorectal cancer

by Giordano, Guido, Parcesepe, Pietro, D’Andrea, Mario Rosario, Coppola, Luigi, Di Raimo, Tania, Remo, Andrea, Manfrin, Erminia, Fiorini, Claudia, Scarpa, Aldo, Amoreo, Carla Azzurra, Conciatori, Fabiana, Milella, Michele, Caruso, Francesca Pia, Cerulo, Luigi, Porras, Almudena, Pancione, Massimo
Published in J Exp Clin Cancer Res (2019)

A map of tumor–host interactions in glioma at single-cell resolution

by Caruso, Francesca Pia, Garofano, Luciano, D'Angelo, Fulvio, Yu, Kai, Tang, Fuchou, Yuan, Jinzhou, Zhang, Jing, Cerulo, Luigi, Pagnotta, Stefano M, Bedognetti, Davide, Sims, Peter A, Suvà, Mario, Su, Xiao-Dong, Lasorella, Anna, Iavarone, Antonio, Ceccarelli, Michele
Published in Gigascience (2020)

A metabolic function of FGFR3-TACC3 gene fusions in cancer

by Frattini, Véronique, Pagnotta, Stefano M., Tala, Fan, Jerry J., Russo, Marco V., Lee, Sang Bae, Garofano, Luciano, Zhang, Jing, Shi, Peiguo, Lewis, Genevieve, Sanson, Heloise, Frederick, Vanessa, Castano, Angelica M., Cerulo, Luigi, Rolland, Delphine C. M., Mall, Raghvendra, Mokhtari, Karima, Elenitoba-Johnson, Kojo S.J., Sanson, Marc, Huang, Xi, Ceccarelli, Michele, Lasorella, Anna, Iavarone, Antonio
Published in Nature (2018)