IRIS: a method for reverse engineering of regulatory relations in gene networks

by Morganella, Sandro, Zoppoli, Pietro, Ceccarelli, Michele
Published 2009

TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach

by Zoppoli, Pietro, Morganella, Sandro, Ceccarelli, Michele
Published 2010

A negative selection heuristic to predict new transcriptional targets

by Cerulo, Luigi, Paduano, Vincenzo, Zoppoli, Pietro, Ceccarelli, Michele
Published 2013

The Role of MicroRNAs in the Regulation of Gastric Cancer Stem Cells: A Meta-Analysis of the Current Status

by Ruggieri, Vitalba, Russi, Sabino, Zoppoli, Pietro, La Rocca, Francesco, Angrisano, Tiziana, Falco, Geppino, Calice, Giovanni, Laurino, Simona
Published in J Clin Med (2019)

Gastric Cancer Stem Cells: A Glimpse on Metabolic Reprogramming

by Addeo, Martina, Di Paola, Giuseppina, Verma, Henu Kumar, Laurino, Simona, Russi, Sabino, Zoppoli, Pietro, Falco, Geppino, Mazzone, Pellegrino
Published in Front Oncol (2021)

Identification of a Novel Gene Signature of ES Cells Self-Renewal Fluctuation through System-Wide Analysis

by Cerulo, Luigi, Tagliaferri, Daniela, Marotta, Pina, Zoppoli, Pietro, Russo, Filomena, Mazio, Claudia, DeFelice, Mario, Ceccarelli, Michele, Falco, Geppino
Published 2014

TRAP1 Regulates Wnt/β-Catenin Pathway through LRP5/6 Receptors Expression Modulation

by Lettini, Giacomo, Condelli, Valentina, Pietrafesa, Michele, Crispo, Fabiana, Zoppoli, Pietro, Maddalena, Francesca, Laurenzana, Ilaria, Sgambato, Alessandro, Esposito, Franca, Landriscina, Matteo
Published in Int J Mol Sci (2020)

Ensemble of Gene Signatures Identifies Novel Biomarkers in Colorectal Cancer Activated through PPARγ and TNFα Signaling

by Pagnotta, Stefano Maria, Laudanna, Carmelo, Pancione, Massimo, Sabatino, Lina, Votino, Carolina, Remo, Andrea, Cerulo, Luigi, Zoppoli, Pietro, Manfrin, Erminia, Colantuoni, Vittorio, Ceccarelli, Michele
Published 2013

Extracellular Vesicles: A New Prospective in Crosstalk between Microenvironment and Stem Cells in Hematological Malignancies

by Laurenzana, Ilaria, Lamorte, Daniela, Trino, Stefania, De Luca, Luciana, Ambrosino, Concetta, Zoppoli, Pietro, Ruggieri, Vitalba, Del Vecchio, Luigi, Musto, Pellegrino, Caivano, Antonella, Falco, Geppino
Published in Stem Cells Int (2018)

Comparative Gene Expression Profiling of Tobacco-Associated HPV-Positive versus Negative Oral Squamous Carcinoma Cell Lines

by Lepore, Silvia, Lettini, Giacomo, Condelli, Valentina, Sisinni, Lorenza, Piscazzi, Annamaria, Simeon, Vittorio, Zoppoli, Pietro, Pedicillo, Maria Carmela, Natalicchio, Maria Iole, Pietrafesa, Michele, Landriscina, Matteo
Published in Int J Med Sci (2020)

Gene Copy Number and Post-Transductional Mechanisms Regulate TRAP1 Expression in Human Colorectal Carcinomas

by Pietrafesa, Michele, Maddalena, Francesca, Possidente, Luciana, Condelli, Valentina, Zoppoli, Pietro, Li Bergolis, Valeria, Rodriquenz, Maria Grazia, Aieta, Michele, Vita, Giulia, Esposito, Franca, Landriscina, Matteo
Published in Int J Mol Sci (2019)

Specific gene expression signatures induced by the multiple oncogenic alterations that occur within the PTEN/PI3K/AKT pathway in lung cancer

by De Marco, Carmela, Laudanna, Carmelo, Rinaldo, Nicola, Oliveira, Duarte Mendes, Ravo, Maria, Weisz, Alessandro, Ceccarelli, Michele, Caira, Elvira, Rizzuto, Antonia, Zoppoli, Pietro, Malanga, Donatella, Viglietto, Giuseppe
Published in PLoS One (2017)

Gene expression profiling at early organogenesis reveals both common and diverse mechanisms in foregut patterning

by Fagman, Henrik, Amendola, Elena, Parrillo, Luca, Zoppoli, Pietro, Marotta, Pina, Scarfò, Marzia, De Luca, Pasquale, de Carvalho, Denise Pires, Ceccarelli, Michele, De Felice, Mario, Di Lauro, Roberto
Published 2011

Signaling Networks Associated with AKT Activation in Non-Small Cell Lung Cancer (NSCLC): New Insights on the Role of Phosphatydil-Inositol-3 kinase

by Scrima, Marianna, De Marco, Carmela, Fabiani, Fernanda, Franco, Renato, Pirozzi, Giuseppe, Rocco, Gaetano, Ravo, Maria, Weisz, Alessandro, Zoppoli, Pietro, Ceccarelli, Michele, Botti, Gerardo, Malanga, Donatella, Viglietto, Giuseppe
Published 2012

Adapting and Surviving: Intra and Extra-Cellular Remodeling in Drug-Resistant Gastric Cancer Cells

by Russi, Sabino, Verma, Henu Kumar, Laurino, Simona, Mazzone, Pellegrino, Storto, Giovanni, Nardelli, Anna, Zoppoli, Pietro, Calice, Giovanni, La Rocca, Francesco, Sgambato, Alessandro, Lucci, Valeria, Falco, Geppino, Ruggieri, Vitalba
Published in Int J Mol Sci (2019)

Gastric Normal Adjacent Mucosa Versus Healthy and Cancer Tissues: Distinctive Transcriptomic Profiles and Biological Features

by Russi, Sabino, Calice, Giovanni, Ruggieri, Vitalba, Laurino, Simona, La Rocca, Francesco, Amendola, Elena, Lapadula, Cinzia, Compare, Debora, Nardone, Gerardo, Musto, Pellegrino, De Felice, Mario, Falco, Geppino, Zoppoli, Pietro
Published in Cancers (Basel) (2019)

Identification of different mutational profiles in cancers arising in specific colon segments by next generation sequencing

by Oliveira, Duarte Mendes, Laudanna, Carmelo, Migliozzi, Simona, Zoppoli, Pietro, Santamaria, Gianluca, Grillone, Katia, Elia, Laura, Mignogna, Chiara, Biamonte, Flavia, Sacco, Rosario, Corcione, Francesco, Viglietto, Giuseppe, Malanga, Donatella, Rizzuto, Antonia
Published in Oncotarget (2018)

TRPV2 Calcium Channel Gene Expression and Outcomes in Gastric Cancer Patients: A Clinically Relevant Association

by Zoppoli, Pietro, Calice, Giovanni, Laurino, Simona, Ruggieri, Vitalba, La Rocca, Francesco, La Torre, Giuseppe, Ciuffi, Mario, Amendola, Elena, De Vita, Ferdinando, Petrillo, Angelica, Napolitano, Giuliana, Falco, Geppino, Russi, Sabino
Published in J Clin Med (2019)

Novel Epigenetic Eight-Gene Signature Predictive of Poor Prognosis and MSI-Like Phenotype in Human Metastatic Colorectal Carcinomas

by Condelli, Valentina, Calice, Giovanni, Cassano, Alessandra, Basso, Michele, Rodriquenz, Maria Grazia, Zupa, Angela, Maddalena, Francesca, Crispo, Fabiana, Pietrafesa, Michele, Aieta, Michele, Sgambato, Alessandro, Tortora, Giampaolo, Zoppoli, Pietro, Landriscina, Matteo
Published in Cancers (Basel) (2021)

Protein Syndesmos is a novel RNA-binding protein that regulates primary cilia formation

by Avolio, Rosario, Järvelin, Aino I, Mohammed, Shabaz, Agliarulo, Ilenia, Condelli, Valentina, Zoppoli, Pietro, Calice, Giovanni, Sarnataro, Daniela, Bechara, Elias, Tartaglia, Gian G, Landriscina, Matteo, Castello, Alfredo, Esposito, Franca, Matassa, Danilo S
Published in Nucleic Acids Res (2018)