Learning gene regulatory networks from only positive and unlabeled data

Autor Elkan Charles, Cerulo Luigi, Ceccarelli Michele
Vydáno 2010-05-01

Learning gene regulatory networks from only positive and unlabeled data

Autor Cerulo, Luigi, Elkan, Charles, Ceccarelli, Michele
Vydáno 2010

A negative selection heuristic to predict new transcriptional targets

Autor Cerulo, Luigi, Paduano, Vincenzo, Zoppoli, Pietro, Ceccarelli, Michele
Vydáno 2013

A review of COVID-19 biomarkers and drug targets: resources and tools

Autor Caruso, Francesca P, Scala, Giovanni, Cerulo, Luigi, Ceccarelli, Michele
Vydáno v Brief Bioinform (2020)

Detection of statistically significant network changes in complex biological networks

Autor Mall, Raghvendra, Cerulo, Luigi, Bensmail, Halima, Iavarone, Antonio, Ceccarelli, Michele
Vydáno v BMC Syst Biol (2017)

Deep learning predicts short non-coding RNA functions from only raw sequence data

Autor Noviello, Teresa Maria Rosaria, Ceccarelli, Francesco, Ceccarelli, Michele, Cerulo, Luigi
Vydáno v PLoS Comput Biol (2020)

Centrosome Dynamics and Its Role in Inflammatory Response and Metastatic Process

Autor Pancione, Massimo, Cerulo, Luigi, Remo, Andrea, Giordano, Guido, Gutierrez-Uzquiza, Álvaro, Bragado, Paloma, Porras, Almudena
Vydáno v Biomolecules (2021)

Identification of long non-coding transcripts with feature selection: a comparative study

Autor Ventola, Giovanna M. M., Noviello, Teresa M. R., D’Aniello, Salvatore, Spagnuolo, Antonietta, Ceccarelli, Michele, Cerulo, Luigi
Vydáno v BMC Bioinformatics (2017)

Identification of a Novel Gene Signature of ES Cells Self-Renewal Fluctuation through System-Wide Analysis

Autor Cerulo, Luigi, Tagliaferri, Daniela, Marotta, Pina, Zoppoli, Pietro, Russo, Filomena, Mazio, Claudia, DeFelice, Mario, Ceccarelli, Michele, Falco, Geppino
Vydáno 2014

Detection of long non–coding RNA homology, a comparative study on alignment and alignment–free metrics

Autor Noviello, Teresa M. R., Di Liddo, Antonella, Ventola, Giovanna M., Spagnuolo, Antonietta, D’Aniello, Salvatore, Ceccarelli, Michele, Cerulo, Luigi
Vydáno v BMC Bioinformatics (2018)

RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes

Autor Mall, Raghvendra, Cerulo, Luigi, Garofano, Luciano, Frattini, Veronique, Kunji, Khalid, Bensmail, Halima, Sabedot, Thais S, Noushmehr, Houtan, Lasorella, Anna, Iavarone, Antonio, Ceccarelli, Michele
Vydáno v Nucleic Acids Res (2018)

Ensemble of Gene Signatures Identifies Novel Biomarkers in Colorectal Cancer Activated through PPARγ and TNFα Signaling

Autor Pagnotta, Stefano Maria, Laudanna, Carmelo, Pancione, Massimo, Sabatino, Lina, Votino, Carolina, Remo, Andrea, Cerulo, Luigi, Zoppoli, Pietro, Manfrin, Erminia, Colantuoni, Vittorio, Ceccarelli, Michele
Vydáno 2013

Systems biology analysis of gene expression data and gene network reverse-engineering approaches reveal NFAT5 as a candidate biomarker in Inflammatory Breast Cancer

Autor Remo, Andrea, Simeone, Ines, Pancione, Massimo, Parcesepe, Pietro, Finetti, Pascal, Bensmail, Halima, Cerulo, Luigi, Colantuoni, Vittorio, Birnbaum, Daniel, Bonetti, Franco, Bertucci, Francois, Manfrin, Erminia, Ceccarelli, Michele
Vydáno v J Immunother Cancer (2015)

Systems biology analysis reveals NFAT5 as a novel biomarker and master regulator of inflammatory breast cancer

Autor Remo, Andrea, Simeone, Ines, Pancione, Massimo, Parcesepe, Pietro, Finetti, Pascal, Cerulo, Luigi, Bensmail, Halima, Birnbaum, Daniel, Van Laere, Steven J, Colantuoni, Vittorio, Bonetti, Franco, Bertucci, François, Manfrin, Erminia, Ceccarelli, Michele
Vydáno v J Transl Med (2015)

Cancer-related CD15/FUT4 overexpression decreases benefit to agents targeting EGFR or VEGF acting as a novel RAF-MEK-ERK kinase downstream regulator in metastatic colorectal cancer

Autor Giordano, Guido, Febbraro, Antonio, Tomaselli, Eugenio, Sarnicola, Maria Lucia, Parcesepe, Pietro, Parente, Domenico, Forte, Nicola, Fabozzi, Alessio, Remo, Andrea, Bonetti, Andrea, Manfrin, Erminia, Ghasemi, Somayehsadat, Ceccarelli, Michele, Cerulo, Luigi, Bazzoni, Flavia, Pancione, Massimo
Vydáno v J Exp Clin Cancer Res (2015)

Retinoic Acid Induces Embryonic Stem Cells (ESCs) Transition to 2 Cell-Like State Through a Coordinated Expression of Dux and Duxbl1

Autor Tagliaferri, Daniela, Mazzone, Pellegrino, Noviello, Teresa M. R., Addeo, Martina, Angrisano, Tiziana, Del Vecchio, Luigi, Visconte, Feliciano, Ruggieri, Vitalba, Russi, Sabino, Caivano, Antonella, Cantone, Irene, De Felice, Mario, Ceccarelli, Michele, Cerulo, Luigi, Falco, Geppino
Vydáno v Front Cell Dev Biol (2020)

Identification of genetic determinants of breast cancer immune phenotypes by integrative genome-scale analysis

Autor Hendrickx, Wouter, Simeone, Ines, Anjum, Samreen, Mokrab, Younes, Bertucci, François, Finetti, Pascal, Curigliano, Giuseppe, Seliger, Barbara, Cerulo, Luigi, Tomei, Sara, Delogu, Lucia Gemma, Maccalli, Cristina, Wang, Ena, Miller, Lance D., Marincola, Francesco M., Ceccarelli, Michele, Bedognetti, Davide
Vydáno v Oncoimmunology (2017)

JAK/Stat5-mediated subtype-specific lymphocyte antigen 6 complex, locus G6D (LY6G6D) expression drives mismatch repair proficient colorectal cancer

Autor Giordano, Guido, Parcesepe, Pietro, D’Andrea, Mario Rosario, Coppola, Luigi, Di Raimo, Tania, Remo, Andrea, Manfrin, Erminia, Fiorini, Claudia, Scarpa, Aldo, Amoreo, Carla Azzurra, Conciatori, Fabiana, Milella, Michele, Caruso, Francesca Pia, Cerulo, Luigi, Porras, Almudena, Pancione, Massimo
Vydáno v J Exp Clin Cancer Res (2019)

A map of tumor–host interactions in glioma at single-cell resolution

Autor Caruso, Francesca Pia, Garofano, Luciano, D'Angelo, Fulvio, Yu, Kai, Tang, Fuchou, Yuan, Jinzhou, Zhang, Jing, Cerulo, Luigi, Pagnotta, Stefano M, Bedognetti, Davide, Sims, Peter A, Suvà, Mario, Su, Xiao-Dong, Lasorella, Anna, Iavarone, Antonio, Ceccarelli, Michele
Vydáno v Gigascience (2020)

A metabolic function of FGFR3-TACC3 gene fusions in cancer

Autor Frattini, Véronique, Pagnotta, Stefano M., Tala, Fan, Jerry J., Russo, Marco V., Lee, Sang Bae, Garofano, Luciano, Zhang, Jing, Shi, Peiguo, Lewis, Genevieve, Sanson, Heloise, Frederick, Vanessa, Castano, Angelica M., Cerulo, Luigi, Rolland, Delphine C. M., Mall, Raghvendra, Mokhtari, Karima, Elenitoba-Johnson, Kojo S.J., Sanson, Marc, Huang, Xi, Ceccarelli, Michele, Lasorella, Anna, Iavarone, Antonio
Vydáno v Nature (2018)