SNPs Occur in Regions with Less Genomic Sequence Conservation

Por Castle, John C.
Publicado em 2011

Targeting the tumor mutanome for personalized vaccination therapy

Por Kreiter, Sebastian, Castle, John C., Türeci, Özlem, Sahin, Ugur
Publicado em 2012

A catalog of HLA type, HLA expression, and neo-epitope candidates in human cancer cell lines

Por Boegel, Sebastian, Löwer, Martin, Bukur, Thomas, Sahin, Ugur, Castle, John C
Publicado no Oncoimmunology (2014)

Evolutionarily conserved and diverged alternative splicing events show different expression and functional profiles

Por Kan, Zhengyan, Garrett-Engele, Philip W., Johnson, Jason M., Castle, John C.
Publicado em 2005

Definition, conservation and epigenetics of housekeeping and tissue-enriched genes

Por She, Xinwei, Rohl, Carol A, Castle, John C, Kulkarni, Amit V, Johnson, Jason M, Chen, Ronghua
Publicado em 2009

Differential expression of 24,426 human alternative splicing events and predicted cis-regulation in 48 tissues and cell lines

Por Castle, John C., Zhang, Chaolin, Shah, Jyoti K., Kulkarni, Amit V., Cooper, Thomas A., Johnson, Jason M.
Publicado em 2008

rapmad: Robust analysis of peptide microarray data

Por Renard, Bernhard Y, Löwer, Martin, Kühne, Yvonne, Reimer, Ulf, Rothermel, Andrée, Türeci, Özlem, Castle, John C, Sahin, Ugur
Publicado em 2011

Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways

Por Levine, David M, Haynor, David R, Castle, John C, Stepaniants, Sergey B, Pellegrini, Matteo, Mao, Mao, Johnson, Jason M
Publicado em 2006

A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart

Por Kalsotra, Auinash, Xiao, Xinshu, Ward, Amanda J., Castle, John C., Johnson, Jason M., Burge, Christopher B., Cooper, Thomas A.
Publicado em 2008

TCLP: an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression

Por Scholtalbers, Jelle, Boegel, Sebastian, Bukur, Thomas, Byl, Marius, Goerges, Sebastian, Sorn, Patrick, Loewer, Martin, Sahin, Ugur, Castle, John C.
Publicado no Genome Med (2015)

ACC2 Is Expressed at High Levels Human White Adipose and Has an Isoform with a Novel N-Terminus

Por Castle, John C., Hara, Yoshikazu, Raymond, Christopher K., Garrett-Engele, Philip, Ohwaki, Kenji, Kan, Zhengyan, Kusunoki, Jun, Johnson, Jason M.
Publicado em 2009

Correction: ACC2 Is Expressed at High Levels in Human White Adipose and Has an Isoform with a Novel N-Terminus

Por Castle, John C., Hara, Yoshikazu, Raymond, Christopher K., Garrett-Engele, Philip, Ohwaki, Kenji, Kan, Zhengyan, Kusunoki, Jun, Johnson, Jason M.
Publicado em 2009

Global regulation of alternative splicing during myogenic differentiation

Por Bland, Christopher S., Wang, Eric T., Vu, Anthony, David, Marjorie P., Castle, John C., Johnson, Jason M., Burge, Christopher B., Cooper, Thomas A.
Publicado em 2010

HLA typing from RNA-Seq sequence reads

Por Boegel, Sebastian, Löwer, Martin, Schäfer, Michael, Bukur, Thomas, de Graaf, Jos, Boisguérin, Valesca, Türeci, Özlem, Diken, Mustafa, Castle, John C, Sahin, Ugur
Publicado em 2012

A boy with homozygous microdeletion of NEUROG1 presents with a congenital cranial dysinnervation disorder [Moebius syndrome variant]

Por Schröder, Julia C, Läßig, Anne K, Galetzka, Danuta, Peters, Angelika, Castle, John C, Diederich, Stefan, Zechner, Ulrich, Müller-Forell, Wibke, Keilmann, Annerose, Bartsch, Oliver
Publicado em 2013

Mutated tumor alleles are expressed according to their DNA frequency

Por Castle, John C., Loewer, Martin, Boegel, Sebastian, Tadmor, Arbel D., Boisguerin, Valesca, de Graaf, Jos, Paret, Claudia, Diken, Mustafa, Kreiter, Sebastian, Türeci, Özlem, Sahin, Ugur
Publicado em 2014

Activity of the Rhodopseudomonas palustris p-Coumaroyl-Homoserine Lactone-Responsive Transcription Factor RpaR

Por Hirakawa, Hidetada, Oda, Yasuhiro, Phattarasukol, Somsak, Armour, Christopher D., Castle, John C., Raymond, Christopher K., Lappala, Colin R., Schaefer, Amy L., Harwood, Caroline S., Greenberg, E. Peter
Publicado em 2011

Exon and junction microarrays detect widespread mouse strain- and sex-bias expression differences

Por Schadt Eric E, Russell Archie, Kulkarni Amit V, Shah Jyoti K, Edwards Stephen, GuhaThakurta Debraj, Modrek Barmak, Su Wan-Lin, Johnson Jason M, Castle John C
Publicado em 2008-06-01

Exon and junction microarrays detect widespread mouse strain- and sex-bias expression differences

Por Su, Wan-Lin, Modrek, Barmak, GuhaThakurta, Debraj, Edwards, Stephen, Shah, Jyoti K, Kulkarni, Amit V, Russell, Archie, Schadt, Eric E, Johnson, Jason M, Castle, John C
Publicado em 2008

DNA copy number, including telomeres and mitochondria, assayed using next-generation sequencing

Por Castle, John C, Biery, Matthew, Bouzek, Heather, Xie, Tao, Chen, Ronghua, Misura, Kira, Jackson, Stuart, Armour, Christopher D, Johnson, Jason M, Rohl, Carol A, Raymond, Christopher K
Publicado em 2010