Pan-PCR, a Computational Method for Designing Bacterium-Typing Assays Based on Whole-Genome Sequence Data

Tekijä Yang, Joy Y., Brooks, Shelise, Meyer, Jennifer A., Blakesley, Robert R., Zelazny, Adrian M., Segre, Julia A., Snitkin, Evan S.
Julkaistu 2013

Genomic organization, evolution, and expression of photoprotein and opsin genes in Mnemiopsis leidyi: a new view of ctenophore photocytes

Tekijä Schnitzler, Christine E, Pang, Kevin, Powers, Meghan L, Reitzel, Adam M, Ryan, Joseph F, Simmons, David, Tada, Takashi, Park, Morgan, Gupta, Jyoti, Brooks, Shelise Y, Blakesley, Robert W, Yokoyama, Shozo, Haddock, Steven HD, Martindale, Mark Q, Baxevanis, Andreas D
Julkaistu 2012

Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates

Tekijä Conlan, Sean, Mijares, Lilia A, Becker, Jesse, Blakesley, Robert W, Bouffard, Gerard G, Brooks, Shelise, Coleman, Holly, Gupta, Jyoti, Gurson, Natalie, Park, Morgan, Schmidt, Brian, Thomas, Pamela J, Otto, Michael, Kong, Heidi H, Murray, Patrick R, Segre, Julia A
Julkaistu 2012

Effort required to finish shotgun-generated genome sequences differs significantly among vertebrates

Tekijä Stantripop Sirintorn, Schandler Karen, Ho Shi-Ling, Haghighi Payam, Coleman Holly, Barnabas Beatrice B, Brooks Shelise Y, Maskeri Baishali, McDowell Jennifer C, Gupta Jyoti, Hansen Nancy F, Blakesley Robert W, Vogt Jennifer L, Thomas Pamela J, Bouffard Gerard G, Green Eric D
Julkaistu 2010-01-01

Effort required to finish shotgun-generated genome sequences differs significantly among vertebrates

Tekijä Blakesley, Robert W, Hansen, Nancy F, Gupta, Jyoti, McDowell, Jennifer C, Maskeri, Baishali, Barnabas, Beatrice B, Brooks, Shelise Y, Coleman, Holly, Haghighi, Payam, Ho, Shi-Ling, Schandler, Karen, Stantripop, Sirintorn, Vogt, Jennifer L, Thomas, Pamela J, Bouffard, Gerard G, Green, Eric D
Julkaistu 2010

An intermediate grade of finished genomic sequence suitable for comparative analyses

Tekijä Blakesley, Robert W., Hansen, Nancy F., Mullikin, James C., Thomas, Pamela J., McDowell, Jennifer C., Maskeri, Baishali, Young, Alice C., Benjamin, Beatrice, Brooks, Shelise Y., Coleman, Bradley I., Gupta, Jyoti, Ho, Shi-Ling, Karlins, Eric M., Maduro, Quino L., Stantripop, Sirintorn, Tsurgeon, Cyrus, Vogt, Jennifer L., Walker, Michelle A., Masiello, Catherine A., Guan, Xiaobin, Bouffard, Gerard G., Green, Eric D.
Julkaistu 2004

Single molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae

Tekijä Conlan, Sean, Thomas, Pamela J., Deming, Clayton, Park, Morgan, Lau, Anna F., Dekker, John P., Snitkin, Evan S., Clark, Tyson A., Luong, Khai, Song, Yi, Tsai, Yu-Chih, Boitano, Matthew, Gupta, Jyoti, Brooks, Shelise Y., Schmidt, Brian, Young, Alice C., Thomas, James W., Bouffard, Gerard G., Blakesley, Robert W., Mullikin, James C., Korlach, Jonas, Henderson, David K., Frank, Karen M., Palmore, Tara N., Segre, Julia A.
Julkaistu 2014

Longitudinal shift in diabetic wound microbiota correlates with prolonged skin defense response

Tekijä Grice, Elizabeth A., Snitkin, Evan S., Yockey, Laura J., Bermudez, Dustin M., Liechty, Kenneth W., Segre, Julia A., Mullikin, Jim, Blakesley, Robert, Young, Alice, Chu, Grace, Ramsahoye, Colleen, Lovett, Sean, Han, Joel, Legaspi, Richelle, Fuksenko, Tatyana, Reddix-Dugue, Natalie, Sison, Christina, Gregory, Michael, Montemayor, Casandra, Gestole, Marie, Hargrove, April, Johnson, Taccara, Myrick, Jerlil, Riebow, Nancy, Schmidt, Brian, Novotny, Betsy, Gupti, Jyoti, Benjamin, Betty, Brooks, Shelise, Coleman, Holly, Ho, Shi-ling, Schandler, Karen, Smith, Lauren, Stantripop, Mal, Maduro, Quino, Bouffard, Gerry, Dekhtyar, Mila, Guan, Xiaobin, Masiello, Cathy, Maskeri, Baishali, McDowell, Jenny, Park, Morgan, Jacques Thomas, Pamela
Julkaistu 2010

Genome-wide recombination drives diversification of epidemic strains of Acinetobacter baumannii

Tekijä Snitkin, Evan S., Zelazny, Adrian M., Montero, Clemente I., Stock, Frida, Mijares, Lilia, Murray, Patrick R., Segre, Julie A., Mullikin, Jim, Blakesley, Robert, Young, Alice, Chu, Grace, Ramsahoye, Colleen, Lovett, Sean, Han, Joel, Legaspi, Richelle, Sison, Christina, Gregory, Michael, Montemayor, Casandra, Gestole, Marie, Hargrove, April, Johnson, Taccara, Myrick, Jerlil, Riebow, Nancy, Schmidt, Brian, Novotny, Betsy, Gupta, Jyoti, Benjamin, Betty, Brooks, Shelise, Coleman, Holly, Ho, Shi-ling, Schandler, Karen, Smith, Lauren, Stantripop, Mal, Maduro, Quino, Bouffard, Gerry, Dekhtyar, Mila, Guan, Xiaobin, Masiello, Cathy, Maskeri, Baishali, McDowell, Jenny, Park, Morgan, Thomas, Pamela
Julkaistu 2011

Circadian changes in long noncoding RNAs in the pineal gland

Tekijä Coon, Steven L., Munson, Peter J., Cherukuri, Praveen F., Sugden, David, Rath, Martin F., Møller, Morten, Clokie, Samuel J. H., Fu, Cong, Olanich, Mary E., Rangel, Zoila, Werner, Thomas, Mullikin, James C., Klein, David C., Benjamin, Betty, Blakesley, Robert, Bouffard, Gerry, Brooks, Shelise, Chu, Grace, Coleman, Holly, Dekhtyar, Mila, Gregory, Michael, Guan, Xiaobin, Gupta, Jyoti, Han, Joel, Hargrove, April, Ho, Shi-ling, Johnson, Taccara, Legaspi, Richelle, Lovett, Sean, Maduro, Quino, Masiello, Cathy, Maskeri, Baishali, McDowell, Jenny, Montemayor, Casandra, Novotny, Betsy, Park, Morgan, Riebow, Nancy, Schandler, Karen, Schmidt, Brian, Sison, Christina, Stantripop, Mal, Thomas, James, Vemulapalli, Meg, Young, Alice
Julkaistu 2012

Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants

Tekijä Parker, Stephen C. J., Stitzel, Michael L., Taylor, D. Leland, Orozco, Jose Miguel, Erdos, Michael R., Akiyama, Jennifer A., van Bueren, Kelly Lammerts, Chines, Peter S., Narisu, Narisu, Black, Brian L., Visel, Axel, Pennacchio, Len A., Collins, Francis S., Becker, Jesse, Benjamin, Betty, Blakesley, Robert, Bouffard, Gerry, Brooks, Shelise, Coleman, Holly, Dekhtyar, Mila, Gregory, Michael, Guan, Xiaobin, Gupta, Jyoti, Han, Joel, Hargrove, April, Ho, Shi-ling, Johnson, Taccara, Legaspi, Richelle, Lovett, Sean, Maduro, Quino, Masiello, Cathy, Maskeri, Baishali, McDowell, Jenny, Montemayor, Casandra, Mullikin, James, Park, Morgan, Riebow, Nancy, Schandler, Karen, Schmidt, Brian, Sison, Christina, Stantripop, Mal, Thomas, James, Thomas, Pam, Vemulapalli, Meg, Young, Alice
Julkaistu 2013

Specific inactivation of two immunomodulatory SIGLEC genes during human evolution

Tekijä Wang, Xiaoxia, Mitra, Nivedita, Secundino, Ismael, Banda, Kalyan, Cruz, Pedro, Padler-Karavani, Vered, Verhagen, Andrea, Reid, Chris, Lari, Martina, Rizzi, Ermanno, Balsamo, Carlotta, Corti, Giorgio, De Bellis, Gianluca, Longo, Laura, Beggs, William, Caramelli, David, Tishkoff, Sarah A., Hayakawa, Toshiyuki, Green, Eric D., Mullikin, James C., Nizet, Victor, Bui, Jack, Varki, Ajit, Benjamin, Betty, Blakesley, Robert, Bouffard, Gerry, Brooks, Shelise, Chu, Grace, Coleman, Holly, Dekhtyar, Mila, Gregory, Michael, Guan, Xiaobin, Gupta, Jyoti, Han, Joel, Hargrove, April, Ho, Shi-ling, Johnson, Taccara, Legaspi, Richelle, Lovett, Sean, Maduro, Quino, Masiello, Cathy, Maskeri, Baishali, McDowell, Jenny, Montemayor, Casandra, Novotny, Betsy, Park, Morgan, Riebow, Nancy, Schandler, Karen, Schmidt, Brian, Sison, Christina, Stantripop, Mal, Thomas, James, Vemulapalli, Meg, Young, Alice
Julkaistu 2012

Mining the antibodyome for HIV-1–neutralizing antibodies with next-generation sequencing and phylogenetic pairing of heavy/light chains

Tekijä Zhu, Jiang, Ofek, Gilad, Yang, Yongping, Zhang, Baoshan, Louder, Mark K., Lu, Gabriel, McKee, Krisha, Pancera, Marie, Skinner, Jeff, Zhang, Zhenhai, Parks, Robert, Eudailey, Joshua, Lloyd, Krissey E., Blinn, Julie, Alam, S. Munir, Haynes, Barton F., Simek, Melissa, Burton, Dennis R., Koff, Wayne C., Mullikin, James C., Mascola, John R., Shapiro, Lawrence, Kwong, Peter D., Becker, Jesse, Benjamin, Betty, Blakesley, Robert, Bouffard, Gerry, Brooks, Shelise, Coleman, Holly, Dekhtyar, Mila, Gregory, Michael, Guan, Xiaobin, Gupta, Jyoti, Han, Joel, Hargrove, April, Ho, Shi-ling, Johnson, Taccara, Legaspi, Richelle, Lovett, Sean, Maduro, Quino, Masiello, Cathy, Maskeri, Baishali, McDowell, Jenny, Montemayor, Casandra, Mullikin, James, Park, Morgan, Riebow, Nancy, Schandler, Karen, Schmidt, Brian, Sison, Christina, Stantripop, Mal, Thomas, James, Thomas, Pam, Vemulapalli, Meg, Young, Alice
Julkaistu 2013

Telomere-to-telomere assembly of a complete human X chromosome

Tekijä Miga, Karen H., Koren, Sergey, Rhie, Arang, Vollger, Mitchell R., Gershman, Ariel, Bzikadze, Andrey, Brooks, Shelise, Howe, Edmund, Porubsky, David, Logsdon, Glennis A., Schneider, Valerie A., Potapova, Tamara, Wood, Jonathan, Chow, William, Armstrong, Joel, Fredrickson, Jeanne, Pak, Evgenia, Tigyi, Kristof, Kremitzki, Milinn, Markovic, Christopher, Maduro, Valerie, Dutra, Amalia, Bouffard, Gerard G., Chang, Alexander M., Hansen, Nancy F., Wilfert, Amy B., Thibaud-Nissen, Françoise, Schmitt, Anthony D., Belton, Jon-Matthew, Selvaraj, Siddarth, Dennis, Megan Y., Soto, Daniela C., Sahasrabudhe, Ruta, Kaya, Gulhan, Quick, Josh, Loman, Nicholas J., Holmes, Nadine, Loose, Matthew, Surti, Urvashi, Risques, Rosa ana, Graves Lindsay, Tina A., Fulton, Robert, Hall, Ira, Paten, Benedict, Howe, Kerstin, Timp, Winston, Young, Alice, Mullikin, James C., Pevzner, Pavel A., Gerton, Jennifer L., Sullivan, Beth A., Eichler, Evan E., Phillippy, Adam M.
Julkaisussa Nature (2020)