CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data

per Sun, Zhifu, Evans, Jared, Bhagwate, Aditya, Middha, Sumit, Bockol, Matthew, Yan, Huihuang, Kocher, Jean-Pierre
Publicat 2014

BBBomics-Human Blood Brain Barrier Transcriptomics Hub

per Kalari, Krishna R., Thompson, Kevin J., Nair, Asha A., Tang, Xiaojia, Bockol, Matthew A., Jhawar, Navya, Swaminathan, Suresh K., Lowe, Val J., Kandimalla, Karunya K.
Publicat a Front Neurosci (2016)

Recommendations for performance optimizations when using GATK3.8 and GATK4

per Heldenbrand, Jacob R, Baheti, Saurabh, Bockol, Matthew A, Drucker, Travis M, Hart, Steven N, Hudson, Matthew E, Iyer, Ravishankar K, Kalmbach, Michael T, Kendig, Katherine I, Klee, Eric W, Mattson, Nathan R, Wieben, Eric D, Wiepert, Mathieu, Wildman, Derek E, Mainzer, Liudmila S
Publicat a BMC Bioinformatics (2019)

Correction to: Recommendations for performance optimizations when using GATK3.8 and GATK4

per Heldenbrand, Jacob R., Baheti, Saurabh, Bockol, Matthew A., Drucker, Travis M., Hart, Steven N., Hudson, Matthew E., Iyer, Ravishankar K., Kalmbach, Michael T., Kendig, Katherine I., Klee, Eric W., Mattson, Nathan R., Wieben, Eric D., Wiepert, Mathieu, Wildman, Derek E., Mainzer, Liudmila S.
Publicat a BMC Bioinformatics (2019)

MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing

per Kalari, Krishna R, Nair, Asha A, Bhavsar, Jaysheel D, O’Brien, Daniel R, Davila, Jaime I, Bockol, Matthew A, Nie, Jinfu, Tang, Xiaojia, Baheti, Saurabh, Doughty, Jay B, Middha, Sumit, Sicotte, Hugues, Thompson, Aubrey E, Asmann, Yan W, Kocher, Jean-Pierre A
Publicat a BMC Bioinformatics (2014)

Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy

per Kendig, Katherine I., Baheti, Saurabh, Bockol, Matthew A., Drucker, Travis M., Hart, Steven N., Heldenbrand, Jacob R., Hernaez, Mikel, Hudson, Matthew E., Kalmbach, Michael T., Klee, Eric W., Mattson, Nathan R., Ross, Christian A., Taschuk, Morgan, Wieben, Eric D., Wiepert, Mathieu, Wildman, Derek E., Mainzer, Liudmila S.
Publicat a Front Genet (2019)

Molecular characterization of colorectal adenomas with and without malignancy reveals distinguishing genome, transcriptome and methylome alterations

per Druliner, Brooke R., Wang, Panwen, Bae, Taejeong, Baheti, Saurabh, Slettedahl, Seth, Mahoney, Douglas, Vasmatzis, Nikolaos, Xu, Hang, Kim, Minsoo, Bockol, Matthew, O’Brien, Daniel, Grill, Diane, Warner, Nathaniel, Munoz-Gomez, Miguel, Kossick, Kimberlee, Johnson, Ruth, Mouchli, Mohamad, Felmlee-Devine, Donna, Washechek-Aletto, Jill, Smyrk, Thomas, Oberg, Ann, Wang, Junwen, Chia, Nicholas, Abyzov, Alexej, Ahlquist, David, Boardman, Lisa A.
Publicat a Sci Rep (2018)