NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data

Tekijä Bi, Yingtao, Davuluri, Ramana V
Julkaistu 2013

Evaluation of data discretization methods to derive platform independent isoform expression signatures for multi-class tumor subtyping

Tekijä Jung, Segun, Bi, Yingtao, Davuluri, Ramana V
Julkaisussa BMC Genomics (2015)

Tree-Based Position Weight Matrix Approach to Model Transcription Factor Binding Site Profiles

Tekijä Bi, Yingtao, Kim, Hyunsoo, Gupta, Ravi, Davuluri, Ramana V.
Julkaistu 2011

Comparative evaluation of isoform-level gene expression estimation algorithms for RNA-seq and exon-array platforms

Tekijä Dapas, Matthew, Kandpal, Manoj, Bi, Yingtao, Davuluri, Ramana V
Julkaisussa Brief Bioinform (2017)

IsoformEx: isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data

Tekijä Kim, Hyunsoo, Bi, Yingtao, Pal, Sharmistha, Gupta, Ravi, Davuluri, Ramana V
Julkaistu 2011

Isoform level expression profiles provide better cancer signatures than gene level expression profiles

Tekijä Zhang, ZhongFa, Pal, Sharmistha, Bi, Yingtao, Tchou, Julia, Davuluri, Ramana V
Julkaistu 2013

MB-31 MicroRNA EXPRESSION PATTERNS IN TISSUE AND CEREBROSPINAL FLUID AID IN MOLECULAR CLASSIFICATION OF PEDIATRIC MEDULLOBLASTOMA

Tekijä Lulla, Rishi, Laskowski, Joseph, Bi, Yingtao, Goldman, Stewart, Fangusaro, Jason, Gopalakrishnan, Vidya
Julkaisussa Neuro Oncol (2015)

Identification of Genetic and Epigenetic Variants Associated with Breast Cancer Prognosis by Integrative Bioinformatics Analysis

Tekijä Shilpi, Arunima, Bi, Yingtao, Jung, Segun, Patra, Samir K., Davuluri, Ramana V.
Julkaisussa Cancer Inform (2017)

A comparative study of evaluating missing value imputation methods in label-free proteomics

Tekijä Jin, Liang, Bi, Yingtao, Hu, Chenqi, Qu, Jun, Shen, Shichen, Wang, Xue, Tian, Yu
Julkaisussa Sci Rep (2021)

Isoform-level gene signature improves prognostic stratification and accurately classifies glioblastoma subtypes

Tekijä Pal, Sharmistha, Bi, Yingtao, Macyszyn, Luke, Showe, Louise C., O'Rourke, Donald M., Davuluri, Ramana V.
Julkaistu 2014

TMOD-11. A NOVEL ANIMAL MODEL OF MEDULLOBLASTOMA METASTASIS

Tekijä Xiang, Chaomei, Baubet, Valérie, Bi, Yingtao, Zhang, Logan, Pal, Sharmistha, O’Rourke, Donald, Martinez-Lage, Maria, Davuluri, Ramana, Dahmane, Nadia
Julkaisussa Neuro Oncol (2017)

Global Identification of EVI1 Target Genes in Acute Myeloid Leukemia

Tekijä Glass, Carolyn, Wuertzer, Charles, Cui, Xiaohui, Bi, Yingtao, Davuluri, Ramana, Xiao, Ying-Yi, Wilson, Michael, Owens, Kristina, Zhang, Yi, Perkins, Archibald
Julkaistu 2013

Shift in Monocyte Apoptosis with Increasing Viral Load and Change in Apoptosis-Related ISG/Bcl2 Family Gene Expression in Chronically HIV-1-Infected Subjects

Tekijä Patro, Sean C., Pal, Sharmistha, Bi, Yingtao, Lynn, Kenneth, Mounzer, Karam C., Kostman, Jay R., Davuluri, Ramana V., Montaner, Luis J.
Julkaisussa J Virol (2014)

Correction for Patro et al., Shift in Monocyte Apoptosis with Increasing Viral Load and Change in Apoptosis-Related ISG/Bcl2 Family Gene Expression in Chronically HIV-1-Infected Su...

Tekijä Patro, Sean C., Pal, Sharmistha, Bi, Yingtao, Lynn, Kenneth, Mounzer, Karam C., Kostman, Jay R., Davuluri, Ramana V., Montaner, Luis J.
Julkaisussa J Virol (2015)

Stabilization of HIF-1α and HIF-2α, up-regulation of MYCC and accumulation of stabilized p53 constitute hallmarks of CNS-PNET animal model

Tekijä Malchenko, Sergey, Sredni, Simone Treiger, Bi, Yingtao, Margaryan, Naira V., Boyineni, Jerusha, Mohanam, Indra, Tomita, Tadanori, Davuluri, Ramana V., Soares, Marcelo B.
Julkaisussa PLoS One (2017)

Identifying the ubiquitination targets of E6AP by orthogonal ubiquitin transfer

Tekijä Wang, Yiyang, Liu, Xianpeng, Zhou, Li, Duong, Duc, Bhuripanyo, Karan, Zhao, Bo, Zhou, Han, Liu, Ruochuan, Bi, Yingtao, Kiyokawa, Hiroaki, Yin, Jun
Julkaisussa Nat Commun (2017)

Distinct mechanisms control genome recognition by p53 at its target genes linked to different cell fates

Tekijä Farkas, Marina, Hashimoto, Hideharu, Bi, Yingtao, Davuluri, Ramana V., Resnick-Silverman, Lois, Manfredi, James J., Debler, Erik W., McMahon, Steven B.
Julkaisussa Nat Commun (2021)

Exome sequencing identifies gene variants and networks associated with extreme respiratory outcomes following preterm birth

Tekijä Hamvas, Aaron, Feng, Rui, Bi, Yingtao, Wang, Fan, Bhattacharya, Soumyaroop, Mereness, Jared, Kaushal, Madhurima, Cotten, C Michael, Ballard, Philip L, Mariani, Thomas J
Julkaisussa BMC Genet (2018)

Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes

Tekijä Liu, Xianpeng, Zhao, Bo, Sun, Limin, Bhuripanyo, Karan, Wang, Yiyang, Bi, Yingtao, Davuluri, Ramana V., Duong, Duc M., Nanavati, Dhaval, Yin, Jun, Kiyokawa, Hiroaki
Julkaisussa Nat Commun (2017)

SPROUTY2 DRIVES DRUG RESISTANCE AND PROLIFERATION IN GLIOBLASTOMA

Tekijä Walsh, Alice M., Kapoor, Gurpreet S., Buonato, Janine M., Mathew, Lijoy K., Bi, Yingtao, Davuluri, Ramana V., Martinez-Lage, Maria, Simon, M. Celeste, O’Rourke, Donald M., Lazzara, Matthew J.
Julkaisussa Mol Cancer Res (2015)