Transcription-coupled changes in nuclear mobility of mammalian cis-regulatory elements

di Gu, Bo, Swigut, Tomek, Spencley, Andrew, Bauer, Matthew R., Chung, Mingyu, Meyer, Tobias, Wysocka, Joanna
Pubblicato in Science (2018)

Rapid modeling of cooperating genetic events in cancer through somatic genome editing

di Sánchez-Rivera, Francisco J., Papagiannakopoulos, Thales, Romero, Rodrigo, Tammela, Tuomas, Bauer, Matthew R., Bhutkar, Arjun, Joshi, Nikhil S., Subbaraj, Lakshmipriya, Bronson, Roderick T., Xue, Wen, Jacks, Tyler
Pubblicato in Nature (2014)

Tissue-of-origin Dictates Branched-Chain Amino Acid Metabolism in Mutant Kras-driven Cancers

di Mayers, Jared R., Torrence, Margaret E., Danai, Laura V., Papagiannakopoulos, Thales, Davidson, Shawn M., Bauer, Matthew R., Lau, Allison N., Ji, Brian W., Dixit, Purushottam D., Hosios, Aaron M., Muir, Alexander, Chin, Christopher R., Freinkman, Elizaveta, Jacks, Tyler, Wolpin, Brian M., Vitkup, Dennis, Vander Heiden, Matthew G.
Pubblicato in Science (2016)

DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencing

di Lagerborg, Kim A., Normandin, Erica, Bauer, Matthew R., Adams, Gordon, Figueroa, Katherine, Loreth, Christine, Gladden-Young, Adrianne, Shaw, Bennett, Pearlman, Leah, Shenoy, Erica S., Hooper, David, Pierce, Virginia M., Zachary, Kimon C., Park, Daniel J., MacInnis, Bronwyn L., Lemieux, Jacob E., Sabeti, Pardis C., Reilly, Steven K, Siddle, Katherine J.
Pubblicato in bioRxiv (2021)

Environment impacts the metabolic dependencies of Ras-driven non-small cell lung cancer

di Davidson, Shawn M., Papagiannakopoulos, Thales, Olenchock, Benjamin A., Heyman, Julia E., Keibler, Mark A., Luengo, Alba, Bauer, Matthew R., Jha, Abhishek K., O’Brien, James P., Pierce, Kerry A., Gui, Dan Y., Sullivan, Lucas B., Wasylenko, Thomas M., Subbaraj, Lakshmipriya, Chin, Christopher R., Stephanopolous, Gregory, Mott, Bryan T., Jacks, Tyler, Clish, Clary B., Vander Heiden, Matthew G.
Pubblicato in Cell Metab (2016)

SARS-CoV-2 infected cells present HLA-I peptides from canonical and out-of-frame ORFs

di Weingarten-Gabbay, Shira, Klaeger, Susan, Sarkizova, Siranush, Pearlman, Leah R., Chen, Da-Yuan, Bauer, Matthew R., Taylor, Hannah B., Conway, Hasahn L., Tomkins-Tinch, Christopher H., Finkel, Yaara, Nachshon, Aharon, Gentili, Matteo, Rivera, Keith D., Keskin, Derin B., Rice, Charles M., Clauser, Karl R., Hacohen, Nir, Carr, Steven A., Abelin, Jennifer G., Saeed, Mohsan, Sabeti, Pardis C.
Pubblicato in bioRxiv (2020)

Keap1 loss promotes Kras-driven lung cancer and results in a dependence on glutaminolysis

di Romero, Rodrigo, Sayin, Volkan I., Davidson, Shawn M., Bauer, Matthew R., Singh, Simranjit X., LeBoeuf, Sarah E., Karakousi, Triantafyllia R., Ellis, Donald C., Bhutkar, Arjun, Sanchez-Rivera, Francisco J., Subbaraj, Lakshmipriya, Martinez, Britney, Bronson, Roderick T., Prigge, Justin R., Schmidt, Edward E., Thomas, Craig J., Goparaju, Chandra, Davies, Angela, Dolgalev, Igor, Heguy, Adriana, Allaj, Viola, Poirier, John T., Moreira, Andre L., Rudin, Charles M., Pass, Harvey I., Vander Heiden, Matthew G., Jacks, Tyler, Papagiannakopoulos, Thales
Pubblicato in Nat Med (2017)

Single-Cell Profiling of Ebola Virus Disease In Vivo Reveals Viral and Host Dynamics

di Kotliar, Dylan, Lin, Aaron E., Logue, James, Hughes, Travis K., Khoury, Nadine M., Raju, Siddharth S., Wadsworth, Marc H., Chen, Han, Kurtz, Jonathan R., Dighero-Kemp, Bonnie, Bjornson, Zach B., Mukherjee, Nilanjan, Sellers, Brian A., Tran, Nancy, Bauer, Matthew R., Adams, Gordon C., Adams, Ricky, Rinn, John L., Melé, Marta, Schaffner, Stephen F., Nolan, Garry P., Barnes, Kayla G., Hensley, Lisa E., McIlwain, David R., Shalek, Alex K., Sabeti, Pardis C., Bennett, Richard S.
Pubblicato in Cell (2020)

Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs

di Weingarten-Gabbay, Shira, Klaeger, Susan, Sarkizova, Siranush, Pearlman, Leah R., Chen, Da-Yuan, Gallagher, Kathleen M.E., Bauer, Matthew R., Taylor, Hannah B., Dunn, W. Augustine, Tarr, Christina, Sidney, John, Rachimi, Suzanna, Conway, Hasahn L., Katsis, Katelin, Wang, Yuntong, Leistritz-Edwards, Del, Durkin, Melissa R., Tomkins-Tinch, Christopher H., Finkel, Yaara, Nachshon, Aharon, Gentili, Matteo, Rivera, Keith D., Carulli, Isabel P., Chea, Vipheaviny A., Chandrashekar, Abishek, Bozkus, Cansu Cimen, Carrington, Mary, Bhardwaj, Nina, Barouch, Dan H., Sette, Alessandro, Maus, Marcela V., Rice, Charles M., Clauser, Karl R., Keskin, Derin B., Pregibon, Daniel C., Hacohen, Nir, Carr, Steven A., Abelin, Jennifer G., Saeed, Mohsan, Sabeti, Pardis C.
Pubblicato in Cell (2021)

Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events.

di Lemieux, Jacob E., Siddle, Katherine J., Shaw, Bennett M., Loreth, Christine, Schaffner, Stephen F., Gladden-Young, Adrianne, Adams, Gordon, Fink, Timelia, Tomkins-Tinch, Christopher H., Krasilnikova, Lydia A., DeRuff, Katherine C., Rudy, Melissa, Bauer, Matthew R., Lagerborg, Kim A., Normandin, Erica, Chapman, Sinead B., Reilly, Steven K., Anahtar, Melis N., Lin, Aaron E., Carter, Amber, Myhrvold, Cameron, Kemball, Molly E., Chaluvadi, Sushma, Cusick, Caroline, Flowers, Katelyn, Neumann, Anna, Cerrato, Felecia, Farhat, Maha, Slater, Damien, Harris, Jason B., Branda, John, Hooper, David, Gaeta, Jessie M., Baggett, Travis P., O’Connell, James, Gnirke, Andreas, Lieberman, Tami D., Philippakis, Anthony, Burns, Meagan, Brown, Catherine M., Luban, Jeremy, Ryan, Edward T., Turbett, Sarah E., LaRocque, Regina C., Hanage, William P., Gallagher, Glen R., Madoff, Lawrence C., Smole, Sandra, Pierce, Virginia M., Rosenberg, Eric, Sabeti, Pardis C., Park, Daniel J., Maclnnis, Bronwyn L.
Pubblicato in medRxiv (2020)

Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events

di Lemieux, Jacob E., Siddle, Katherine J., Shaw, Bennett M., Loreth, Christine, Schaffner, Stephen F., Gladden-Young, Adrianne, Adams, Gordon, Fink, Timelia, Tomkins-Tinch, Christopher H., Krasilnikova, Lydia A., DeRuff, Katherine C., Rudy, Melissa, Bauer, Matthew R., Lagerborg, Kim A., Normandin, Erica, Chapman, Sinéad B., Reilly, Steven K., Anahtar, Melis N., Lin, Aaron E., Carter, Amber, Myhrvold, Cameron, Kemball, Molly E., Chaluvadi, Sushma, Cusick, Caroline, Flowers, Katelyn, Neumann, Anna, Cerrato, Felecia, Farhat, Maha, Slater, Damien, Harris, Jason B., Branda, John A., Hooper, David, Gaeta, Jessie M., Baggett, Travis P., O’Connell, James, Gnirke, Andreas, Lieberman, Tami D., Philippakis, Anthony, Burns, Meagan, Brown, Catherine M., Luban, Jeremy, Ryan, Edward T., Turbett, Sarah E., LaRocque, Regina C., Hanage, William P., Gallagher, Glen R., Madoff, Lawrence C., Smole, Sandra, Pierce, Virginia M., Rosenberg, Eric, Sabeti, Pardis C., Park, Daniel J., MacInnis, Bronwyn L.
Pubblicato in Science (2020)