TepiTool: A pipeline for computational prediction of T cell epitope candidates

Por Paul, Sinu, Sidney, John, Sette, Alessandro, Peters, Bjoern
Publicado no Curr Protoc Immunol (2016)

A computational pipeline to generate MHC binding motifs

Por Wang, Peng, Sidney, John, Sette, Alessandro, Peters, Bjoern
Publicado no Immunome Res (2011)

HLA class I supertypes: a revised and updated classification

Por Sidney, John, Peters, Bjoern, Frahm, Nicole, Brander, Christian, Sette, Alessandro
Publicado em 2008

Derivation of an amino acid similarity matrix for peptide:MHC binding and its application as a Bayesian prior

Por Kim, Yohan, Sidney, John, Pinilla, Clemencia, Sette, Alessandro, Peters, Bjoern
Publicado em 2009

T cells in atherosclerosis

Por Tse, Kevin, Tse, Harley, Sidney, John, Sette, Alex, Ley, Klaus
Publicado em 2013

The effect of acylation with fatty acids and other modifications on HLA class II:peptide binding and T cell stimulation for three model peptides

Por Schultz, Heidi S., Østergaard, Søren, Sidney, John, Lamberth, Kasper, Sette, Alessandro
Publicado no PLoS One (2018)

Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines

Por Bui, Huynh-Hoa, Sidney, John, Li, Wei, Fusseder, Nicolas, Sette, Alessandro
Publicado em 2007

IMMUNOCAT—A Data Management System for Epitope Mapping Studies

Por Chung, Jo L., Sun, Jian, Sidney, John, Sette, Alessandro, Peters, Bjoern
Publicado em 2010

A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach

Por Wang, Peng, Sidney, John, Dow, Courtney, Mothé, Bianca, Sette, Alessandro, Peters, Bjoern
Publicado em 2008

Functional classification of class II human leukocyte antigen (HLA) molecules reveals seven different supertypes and a surprising degree of repertoire sharing across supertypes

Por Greenbaum, Jason, Sidney, John, Chung, Jolan, Brander, Christian, Peters, Bjoern, Sette, Alessandro
Publicado em 2011

Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions

Por Kim, Yohan, Sidney, John, Buus, Søren, Sette, Alessandro, Nielsen, Morten, Peters, Bjoern
Publicado em 2014

DEFINITION OF A POOL OF EPITOPES THAT RECAPITULATES THE T CELL REACTIVITY AGAINST MAJOR HOUSE DUST MITE ALLERGENS

Por Hinz, Denise, Oseroff, Carla, Pham, John, Sidney, John, Peters, Bjoern, Sette, Alessandro
Publicado no Clin Exp Allergy (2015)

Defining the Herpes Simplex Virus-Specific CD8(+) T Cell Repertoire in C57BL/6 Mice

Por St. Leger, Anthony J., Peters, Bjoern, Sidney, John, Sette, Alessandro, Hendricks, Robert L.
Publicado em 2011

HLA class I alleles are associated with peptide binding repertoires of different size, affinity and immunogenicity()

Por Paul, Sinu, Weiskopf, Daniela, Angelo, Michael A., Sidney, John, Peters, Bjoern, Sette, Alessandro
Publicado em 2013

Immunodominance Changes as a Function of the Infecting Dengue Virus Serotype and Primary versus Secondary Infection

Por Weiskopf, Daniela, Angelo, Michael A., Sidney, John, Peters, Bjoern, Shresta, Sujan, Sette, Alessandro
Publicado em 2014

Predicting population coverage of T-cell epitope-based diagnostics and vaccines

Por Bui, Huynh-Hoa, Sidney, John, Dinh, Kenny, Southwood, Scott, Newman, Mark J, Sette, Alessandro
Publicado em 2006

Quantitative peptide binding motifs for 19 human and mouse MHC class I molecules derived using positional scanning combinatorial peptide libraries

Por Sidney, John, Assarsson, Erika, Moore, Carrie, Ngo, Sandy, Pinilla, Clemencia, Sette, Alessandro, Peters, Bjoern
Publicado em 2008

Coverage of Related Pathogenic Species by Multivalent and Cross-Protective Vaccine Design: Arenaviruses as a Model System

Por Botten, Jason, Sidney, John, Mothé, Bianca R., Peters, Bjoern, Sette, Alessandro, Kotturi, Maya F.
Publicado em 2010

Five HLA-DP Molecules Frequently Expressed in the Worldwide Human Population Share a Common HLA Supertypic Binding Specificity

Por Sidney, John, Steen, Amiyah, Moore, Carrie, Ngo, Sandy, Chung, Jolan, Peters, Bjoern, Sette, Alessandro
Publicado em 2010

Peptide binding predictions for HLA DR, DP and DQ molecules

Por Wang, Peng, Sidney, John, Kim, Yohan, Sette, Alessandro, Lund, Ole, Nielsen, Morten, Peters, Bjoern
Publicado em 2010