A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons

Por Salzberg Steven L, Allen Jonathan E
Publicado em 2006-08-01

A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons

Por Allen, Jonathan E, Salzberg, Steven L
Publicado em 2006

Computational Gene Prediction Using Multiple Sources of Evidence

Por Allen, Jonathan E., Pertea, Mihaela, Salzberg, Steven L.
Publicado em 2004

DNA signatures for detecting genetic engineering in bacteria

Por Allen, Jonathan E, Gardner, Shea N, Slezak, Tom R
Publicado em 2008

JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions

Por Allen, Jonathan E, Majoros, William H, Pertea, Mihaela, Salzberg, Steven L
Publicado em 2006

Conserved amino acid markers from past influenza pandemic strains

Por Allen, Jonathan E, Gardner, Shea N, Vitalis, Elizabeth A, Slezak, Tom R
Publicado em 2009

Ultra-deep mutant spectrum profiling: improving sequencing accuracy using overlapping read pairs

Por Chen-Harris, Haiyin, Borucki, Monica K, Torres, Clinton, Slezak, Tom R, Allen, Jonathan E
Publicado em 2013

Draft Genome Sequences of Biosafety Level 2 Opportunistic Pathogens Isolated from the Environmental Surfaces of the International Space Station

Por Checinska Sielaff, Aleksandra, Singh, Nitin K., Allen, Jonathan E., Thissen, James, Jaing, Crystal, Venkateswaran, Kasthuri
Publicado no Genome Announc (2016)

Whole metagenome profiles of particulates collected from the International Space Station

Por Be, Nicholas A., Avila-Herrera, Aram, Allen, Jonathan E., Singh, Nitin, Checinska Sielaff, Aleksandra, Jaing, Crystal, Venkateswaran, Kasthuri
Publicado no Microbiome (2017)

Erratum to: Whole metagenome profiles of particulates collected from the International Space Station

Por Be, Nicholas A., Avila-Herrera, Aram, Allen, Jonathan E., Singh, Nitin, Sielaff, Aleksandra Checinska, Jaing, Crystal, Venkateswaran, Kasthuri
Publicado no Microbiome (2017)

Scalable metagenomic taxonomy classification using a reference genome database

Por Ames, Sasha K., Hysom, David A., Gardner, Shea N., Lloyd, G. Scott, Gokhale, Maya B., Allen, Jonathan E.
Publicado em 2013

Ultra-Deep Sequencing of Intra-host Rabies Virus Populations during Cross-species Transmission

Por Borucki, Monica K., Chen-Harris, Haiyin, Lao, Victoria, Vanier, Gilda, Wadford, Debra A., Messenger, Sharon, Allen, Jonathan E.
Publicado em 2013

Using populations of human and microbial genomes for organism detection in metagenomes

Por Ames, Sasha K., Gardner, Shea N., Marti, Jose Manuel, Slezak, Tom R., Gokhale, Maya B., Allen, Jonathan E.
Publicado no Genome Res (2015)

Middle East Respiratory Syndrome Coronavirus Intra-Host Populations Are Characterized by Numerous High Frequency Variants

Por Borucki, Monica K., Lao, Victoria, Hwang, Mona, Gardner, Shea, Adney, Danielle, Munster, Vincent, Bowen, Richard, Allen, Jonathan E.
Publicado no PLoS One (2016)

Correction: Middle East Respiratory Syndrome Coronavirus Intra-Host Populations Are Characterized by Numerous High Frequency Variants

Por Borucki, Monica K., Lao, Victoria, Hwang, Mona, Gardner, Shea, Adney, Danielle, Munster, Vincent, Bowen, Richard, Allen, Jonathan E.
Publicado no PLoS One (2016)

The Role of Viral Population Diversity in Adaptation of Bovine Coronavirus to New Host Environments

Por Borucki, Monica K., Allen, Jonathan E., Chen-Harris, Haiyin, Zemla, Adam, Vanier, Gilda, Mabery, Shalini, Torres, Clinton, Hullinger, Pamela, Slezak, Tom
Publicado em 2013

Metagenomic Analysis of the Airborne Environment in Urban Spaces

Por Be, Nicholas A., Thissen, James B., Fofanov, Viacheslav Y., Allen, Jonathan E., Rojas, Mark, Golovko, George, Fofanov, Yuriy, Koshinsky, Heather, Jaing, Crystal J.
Publicado no Microb Ecol (2014)

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

Por Haas, Brian J, Salzberg, Steven L, Zhu, Wei, Pertea, Mihaela, Allen, Jonathan E, Orvis, Joshua, White, Owen, Buell, C Robin, Wortman, Jennifer R
Publicado em 2008

Sendai virus intra-host population dynamics and host immunocompetence influence viral virulence during in vivo passage

Por Peña, José, Chen-Harris, Haiyin, Allen, Jonathan E., Hwang, Mona, Elsheikh, Maher, Mabery, Shalini, Bielefeldt-Ohmann, Helle, Zemla, Adam T., Bowen, Richard A., Borucki, Monica K.
Publicado no Virus Evol (2016)

Targeted amplification for enhanced detection of biothreat agents by next-generation sequencing

Por Gardner, Shea N., Frey, Kenneth G., Redden, Cassie L., Thissen, James B., Allen, Jonathan E., Allred, Adam F., Dyer, Matthew D., Mokashi, Vishwesh P., Slezak, Tom R.
Publicado no BMC Res Notes (2015)