Understanding the language of gene regulation

Autor Alkema, Wynand, Wasserman, Wyeth W
Vydáno 2003

BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

Autor Hulsen, Tim, de Vlieg, Jacob, Alkema, Wynand
Vydáno 2008

Regulog Analysis: Detection of Conserved Regulatory Networks Across Bacteria: Application to Staphylococcus aureus

Autor Alkema, Wynand B.L., Lenhard, Boris, Wasserman, Wyeth W.
Vydáno 2004

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

Autor Sandelin, Albin, Alkema, Wynand, Engström, Pär, Wasserman, Wyeth W., Lenhard, Boris
Vydáno 2004

MSCAN: identification of functional clusters of transcription factor binding sites

Autor Alkema, Wynand B.L., Johansson, Öjvind, Lagergren, Jens, Wasserman, Wyeth W.
Vydáno 2004

PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood

Autor Hulsen, Tim, Groenen, Peter M. A., de Vlieg, Jacob, Alkema, Wynand
Vydáno 2009

Microbial bioinformatics for food safety and production

Autor Alkema, Wynand, Boekhorst, Jos, Wels, Michiel, van Hijum, Sacha A. F. T.
Vydáno v Brief Bioinform (2016)

Role of alphaArg145 and betaArg263 in the active site of penicillin acylase of Escherichia coli.

Autor Alkema, Wynand B L, Prins, Antoon K, de Vries, Erik, Janssen, Dick B
Vydáno 2002

Literature Mining for the Discovery of Hidden Connections between Drugs, Genes and Diseases

Autor Frijters, Raoul, van Vugt, Marianne, Smeets, Ruben, van Schaik, René, de Vlieg, Jacob, Alkema, Wynand
Vydáno 2010

Clustering analyses in peptidomics revealed that peptide profiles of infant formulae are descriptive

Autor Lambers, Tim T, Gloerich, Jolein, van Hoffen, Els, Alkema, Wynand, Hondmann, Dirk H, van Tol, Eric AF
Vydáno v Food Sci Nutr (2015)

Fermentation-induced variation in heat and oxidative stress phenotypes of Lactococcus lactis MG1363 reveals transcriptome signatures for robustness

Autor Dijkstra, Annereinou R, Alkema, Wynand, Starrenburg, Marjo JC, Hugenholtz, Jeroen, van Hijum, Sacha AFT, Bron, Peter A
Vydáno v Microb Cell Fact (2014)

CoPub: a literature-based keyword enrichment tool for microarray data analysis

Autor Frijters, Raoul, Heupers, Bart, van Beek, Pieter, Bouwhuis, Maurice, van Schaik, René, de Vlieg, Jacob, Polman, Jan, Alkema, Wynand
Vydáno 2008

Strain-Dependent Transcriptome Signatures for Robustness in Lactococcus lactis

Autor Dijkstra, Annereinou R., Alkema, Wynand, Starrenburg, Marjo J. C., Hugenholtz, Jeroen, van Hijum, Sacha A. F. T., Bron, Peter A.
Vydáno v PLoS One (2016)

CoPub update: CoPub 5.0 a text mining system to answer biological questions

Autor Fleuren, Wilco W. M., Verhoeven, Stefan, Frijters, Raoul, Heupers, Bart, Polman, Jan, van Schaik, René, de Vlieg, Jacob, Alkema, Wynand
Vydáno 2011

ss-TEA: Entropy based identification of receptor specific ligand binding residues from a multiple sequence alignment of class A GPCRs

Autor Sanders, Marijn PA, Fleuren, Wilco WM, Verhoeven, Stefan, van den Beld, Sven, Alkema, Wynand, de Vlieg, Jacob, Klomp, Jan PG
Vydáno 2011

Diversity in Robustness of Lactococcus lactis Strains during Heat Stress, Oxidative Stress, and Spray Drying Stress

Autor Dijkstra, Annereinou R., Setyawati, Meily C., Bayjanov, Jumamurat R., Alkema, Wynand, van Hijum, Sacha A. F. T., Bron, Peter A., Hugenholtz, Jeroen
Vydáno 2014

Identification of new biomarker candidates for glucocorticoid induced insulin resistance using literature mining

Autor Fleuren, Wilco WM, Toonen, Erik JM, Verhoeven, Stefan, Frijters, Raoul, Hulsen, Tim, Rullmann, Ton, van Schaik, René, de Vlieg, Jacob, Alkema, Wynand
Vydáno 2013

Assessing the metabolic effects of prednisolone in healthy volunteers using urine metabolic profiling

Autor Ellero-Simatos, Sandrine, Szymańska, Ewa, Rullmann, Ton, Dokter, Wim HA, Ramaker, Raymond, Berger, Ruud, van Iersel, Thijs MP, Smilde, Age K, Hankemeier, Thomas, Alkema, Wynand
Vydáno 2012

Draft Genome Sequence of Lactobacillus delbrueckii subsp. bulgaricus LBB.B5

Autor Urshev, Zoltan, Hajo, Karima, Lenoci, Leonardo, Bron, Peter A., Dijkstra, Annereinou, Alkema, Wynand, Wels, Michiel, Siezen, Roland J., Minkova, Svetlana, van Hijum, Sacha A. F. T.
Vydáno v Genome Announc (2016)

Prednisolone-induced differential gene expression in mouse liver carrying wild type or a dimerization-defective glucocorticoid receptor

Autor Frijters, Raoul, Fleuren, Wilco, Toonen, Erik JM, Tuckermann, Jan P, Reichardt, Holger M, van der Maaden, Hans, van Elsas, Andrea, van Lierop, Marie-Jose, Dokter, Wim, de Vlieg, Jacob, Alkema, Wynand
Vydáno 2010