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Efficient consideration of coordinated water molecules improves computational protein-protein and protein-ligand docking discrimination

Highly coordinated water molecules are frequently an integral part of protein-protein and protein-ligand interfaces. We introduce an updated energy model that efficiently captures the energetic effects of these ordered water molecules on the surfaces of proteins. A two-stage method is developed in w...

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Publicat a:PLoS Comput Biol
Autors principals: Pavlovicz, Ryan E., Park, Hahnbeom, DiMaio, Frank
Format: Artigo
Idioma:Inglês
Publicat: Public Library of Science 2020
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Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC7529342/
https://ncbi.nlm.nih.gov/pubmed/32956350
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pcbi.1008103
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