GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis

BACKGROUND: Nanopore sequencing enables portable, real-time sequencing applications, including point-of-care diagnostics and in-the-field genotyping. Achieving these outcomes requires efficient bioinformatic algorithms for the analysis of raw nanopore signal data. However, comparing raw nanopore sig...

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Veröffentlicht in:BMC Bioinformatics
Hauptverfasser: Gamaarachchi, Hasindu, Lam, Chun Wai, Jayatilaka, Gihan, Samarakoon, Hiruna, Simpson, Jared T., Smith, Martin A., Parameswaran, Sri
Format: Artigo
Sprache:Inglês
Veröffentlicht: BioMed Central 2020
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Research Article
Online Zugang:https://ncbi.nlm.nih.gov/pmc/articles/PMC7430849/
https://ncbi.nlm.nih.gov/pubmed/32758139
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-020-03697-x
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