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Arioc: GPU-accelerated alignment of short bisulfite-treated reads

MOTIVATION: The alignment of bisulfite-treated DNA sequences (BS-seq reads) to a large genome involves a significant computational burden beyond that required to align non-bisulfite-treated reads. In the analysis of BS-seq data, this can present an important performance bottleneck that can be mitiga...

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Bibliografische gegevens
Gepubliceerd in:Bioinformatics
Hoofdauteurs: Wilton, Richard, Li, Xin, Feinberg, Andrew P, Szalay, Alexander S
Formaat: Artigo
Taal:Inglês
Gepubliceerd in: Oxford University Press 2018
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Online toegang:https://ncbi.nlm.nih.gov/pmc/articles/PMC6061805/
https://ncbi.nlm.nih.gov/pubmed/29554207
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/bty167
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