Accelerating Smith-Waterman Alignment for Protein Database Search Using Frequency Distance Filtration Scheme Based on CPU-GPU Collaborative System

The Smith-Waterman (SW) algorithm has been widely utilized for searching biological sequence databases in bioinformatics. Recently, several works have adopted the graphic card with Graphic Processing Units (GPUs) and their associated CUDA model to enhance the performance of SW computations. However,...

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Bibliografiske detaljer
Udgivet i:Int J Genomics
Main Authors: Liu, Yu, Hong, Yang, Lin, Chun-Yuan, Hung, Che-Lun
Format: Artigo
Sprog:Inglês
Udgivet: Hindawi Publishing Corporation 2015
Fag:
Research Article
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC4629039/
https://ncbi.nlm.nih.gov/pubmed/26568953
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1155/2015/761063
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