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CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
BACKGROUND: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more than 25 years. It is based on a dynamic programming approach that explores all the possible alignments between two sequenc...
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| Main Authors: | , |
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| Formato: | Artigo |
| Idioma: | Inglês |
| Publicado em: |
BioMed Central
2008
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| Acesso em linha: | https://ncbi.nlm.nih.gov/pmc/articles/PMC2323659/ https://ncbi.nlm.nih.gov/pubmed/18387198 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2105-9-S2-S10 |
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