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CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions

BACKGROUND: The maximal sensitivity for local alignments makes the Smith-Waterman algorithm a popular choice for protein sequence database search based on pairwise alignment. However, the algorithm is compute-intensive due to a quadratic time complexity. Corresponding runtimes are further compounded...

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Bibliografske podrobnosti
Main Authors: Liu, Yongchao, Wirawan, Adrianto, Schmidt, Bertil
Format: Artigo
Jezik:Inglês
Izdano: BioMed Central 2013
Teme:
Online dostop:https://ncbi.nlm.nih.gov/pmc/articles/PMC3637623/
https://ncbi.nlm.nih.gov/pubmed/23557111
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2105-14-117
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