Dissecting systems-wide data using mixture models: application to identify affected cellular processes

Por Svensson, J Peter, de Menezes, Renée X, Turesson, Ingela, Giphart-Gassler, Micheline, Vrieling, Harry
Publicado em 2005

A test for comparing two groups of samples when analyzing multiple omics profiles

Por Chaturvedi, Nimisha, Goeman, Jelle J, Boer, Judith M, van Wieringen, Wessel N, de Menezes, Renée X
Publicado no BMC Bioinformatics (2014)

Analysis of small-sample clinical genomics studies using multi-parameter shrinkage: application to high-throughput RNA interference screening

Por van de Wiel, Mark A, de Menezes, Renée X, Siebring-van Olst, Ellen, van Beusechem, Victor W
Publicado em 2013

Genomic profiling by DNA amplification of laser capture microdissected tissues and array CGH

Por Cardoso, Joana, Molenaar, Lia, de Menezes, Renée X., Rosenberg, Carla, Morreau, Hans, Möslein, Gabriela, Fodde, Riccardo, Boer, Judith M.
Publicado em 2004

mRNA degradation controls differentiation state-dependent differences in transcript and splice variant abundance

Por 't Hoen, Peter A. C., Hirsch, Michael, de Meijer, Emile J., de Menezes, Renée X., van Ommen, Gert Jan, den Dunnen, Johan T.
Publicado em 2011

Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses

Por van Wieringen, Wessel N, Unger, Kristian, Leday, Gwenaël GR, Krijgsman, Oscar, de Menezes, Renée X, Ylstra, Bauke, van de Wiel, Mark A
Publicado em 2012

Intensity-based analysis of two-colour microarrays enables efficient and flexible hybridization designs

Por 't Hoen, Peter A. C., Turk, Rolf, Boer, Judith M., Sterrenburg, Ellen, de Menezes, Renée X., van Ommen, Gert-Jan B., den Dunnen, Johan T.
Publicado em 2004

Cross-Species Comparison of Human and Mouse Intestinal Polyps Reveals Conserved Mechanisms in Adenomatous Polyposis Coli (APC)-Driven Tumorigenesis

Por Gaspar, Claudia, Cardoso, Joana, Franken, Patrick, Molenaar, Lia, Morreau, Hans, Möslein, Gabriela, Sampson, Julian, Boer, Judith M., de Menezes, Renée X., Fodde, Riccardo
Publicado em 2008

MicroRNA characterize genetic diversity and drug resistance in pediatric acute lymphoblastic leukemia

Por Schotte, Diana, De Menezes, Renée X., Moqadam, Farhad Akbari, Khankahdani, Leila Mohammadi, Lange-Turenhout, Ellen, Chen, Caifu, Pieters, Rob, Den Boer, Monique L.
Publicado em 2011

Evidence for Immune Response, Axonal Dysfunction and Reduced Endocytosis in the Substantia Nigra in Early Stage Parkinson’s Disease

Por Dijkstra, Anke A., Ingrassia, Angela, de Menezes, Renee X., van Kesteren, Ronald E., Rozemuller, Annemieke J. M., Heutink, Peter, van de Berg, Wilma D. J.
Publicado no PLoS One (2015)

Gene expression variation between mouse inbred strains

Por Turk, Rolf, 't Hoen, Peter AC, Sterrenburg, Ellen, de Menezes, Renée X, de Meijer, Emile J, Boer, Judith M, van Ommen, Gert-Jan B, den Dunnen, Johan T
Publicado em 2004

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

Por 't Hoen, Peter A. C., Ariyurek, Yavuz, Thygesen, Helene H., Vreugdenhil, Erno, Vossen, Rolf H. A. M., de Menezes, Renée X., Boer, Judith M., van Ommen, Gert-Jan B., den Dunnen, Johan T.
Publicado em 2008

The expression of 70 apoptosis genes in relation to lineage, genetic subtype, cellular drug resistance, and outcome in childhood acute lymphoblastic leukemia

Por Holleman, Amy, den Boer, Monique L., de Menezes, Renée X., Cheok, Meyling H., Cheng, Cheng, Kazemier, Karin M., Janka-Schaub, Gritta E., Göbel, Ulrich, Graubner, Ulrike B., Evans, William E., Pieters, Rob
Publicado em 2006

Can subtle changes in gene expression be consistently detected with different microarray platforms?

Por Pedotti, Paola, 't Hoen, Peter AC, Vreugdenhil, Erno, Schenk, Geert J, Vossen, Rolf HAM, Ariyurek, Yavuz, de Hollander, Mattias, Kuiper, Rowan, van Ommen, Gertjan JB, den Dunnen, Johan T, Boer, Judith M, de Menezes, Renée X
Publicado em 2008

A cell-based high-throughput screening assay for radiation susceptibility using automated cell counting

Por Hodzic, Jasmina, Dingjan, Ilse, Maas, Mariëlle JP, van der Meulen-Muileman, Ida H, de Menezes, Renee X, Heukelom, Stan, Verheij, Marcel, Gerritsen, Winald R, Geldof, Albert A, van Triest, Baukelien, van Beusechem, Victor W
Publicado no Radiat Oncol (2015)

Targeting JNK-interacting protein 1 (JIP1) sensitises osteosarcoma to doxorubicin

Por De Boer, Jantine Posthuma, van Egmond, Pim W., Helder, Marco N., de Menezes, Renée X., Cleton-Jansen, Anne-Marie, Beliën, Jeroen A.M., Verheul, Henk M. W., van Royen, Barend J., Kaspers, Gert-Jan J.L., van Beusechem, Victor W.
Publicado em 2012

Defective sister chromatid cohesion is synthetically lethal with impaired APC/C function

Por de Lange, Job, Faramarz, Atiq, Oostra, Anneke B., de Menezes, Renee X., van der Meulen, Ida H., Rooimans, Martin A., Rockx, Davy A., Brakenhoff, Ruud H., van Beusechem, Victor W., King, Randall W., de Winter, Johan P., Wolthuis, Rob M. F.
Publicado no Nat Commun (2015)

A subtype of childhood acute lymphoblastic leukaemia with poor treatment outcome: a genome-wide classification study

Por Den Boer, Monique L., van Slegtenhorst, Marjon, De Menezes, Renée X., Cheok, Meyling H., Buijs-Gladdines, Jessica G.C.A.M., Peters, Susan T.C.J.M., Van Zutven, Laura J.C.M., Beverloo, H. Berna, Van der Spek, Peter J., Escherich, Gaby, Horstmann, Martin A., Janka-Schaub, Gritta E., Kamps, Willem A., Evans, William E., Pieters, Rob
Publicado em 2009

Plasma vesicle miRNAs for therapy response monitoring in Hodgkin lymphoma patients

Por van Eijndhoven, Monique A.J., Zijlstra, Josée M., Groenewegen, Nils J., Drees, Esther E.E., van Niele, Stuart, Baglio, S. Rubina, Koppers-Lalic, Danijela, van der Voorn, Hans, Libregts, Sten F.W.M., Wauben, Marca H.M., de Menezes, Renee X., van Weering, Jan R.T., Nieuwland, Rienk, Visser, Lydia, van den Berg, Anke, de Jong, Daphne, Pegtel, D. Michiel
Publicado no JCI Insight (2016)

Evaluation of gene expression signatures predictive of cytogenetic and molecular subtypes of pediatric acute myeloid leukemia

Por Balgobind, Brian V., Van den Heuvel-Eibrink, Marry M., De Menezes, Renee X., Reinhardt, Dirk, Hollink, Iris H.I.M., Arentsen-Peters, Susan T.J.C.M., van Wering, Elisabeth R., Kaspers, Gertjan J.L., Cloos, Jacqueline, de Bont, Evelien S.J.M., Cayuela, Jean-Michel, Baruchel, Andre, Meyer, Claus, Marschalek, Rolf, Trka, Jan, Stary, Jan, Beverloo, H. Berna, Pieters, Rob, Zwaan, C. Michel, den Boer, Monique L.
Publicado em 2011