The transcriptomic profile of ovarian cancer grading

por Yao, Cindy Q, Nguyen, Francis, Haider, Syed, Starmans, Maud H W, Lambin, Philippe, Boutros, Paul C
Publicado en Cancer Med (2015)

NanoStringNormCNV: pre-processing of NanoString CNV data

por Sendorek, Dorota H, Lalonde, Emilie, Yao, Cindy Q, Sabelnykova, Veronica Y, Bristow, Robert G, Boutros, Paul C
Publicado en Bioinformatics (2018)

Deregulation of the spindle assembly checkpoint is associated with paclitaxel resistance in ovarian cancer

por Chong, Taryne, Sarac, Amila, Yao, Cindy Q., Liao, Linda, Lyttle, Nicola, Boutros, Paul C., Bartlett, John M. S., Spears, Melanie
Publicado en J Ovarian Res (2018)

2,3,7,8-Tetrachlorodibenzo-p-dioxin modifies alternative splicing in mouse liver

por Villaseñor-Altamirano, Ana B., Watson, John D., Prokopec, Stephenie D., Yao, Cindy Q., Boutros, Paul C., Pohjanvirta, Raimo, Valdés-Flores, Jesús, Elizondo, Guillermo
Publicado en PLoS One (2019)

Computational approaches to support comparative analysis of multiparametric tests: Modelling versus Training

por Bartlett, John M. S., Bayani, Jane, Kornaga, Elizabeth N., Danaher, Patrick, Crozier, Cheryl, Piper, Tammy, Yao, Cindy Q., Dunn, Janet A., Boutros, Paul C., Stein, Robert C.
Publicado en PLoS One (2020)

A four gene signature of chromosome instability (CIN4) predicts for benefit from taxanes in the NCIC-CTG MA21 clinical trial

por Spears, Melanie, Lyttle, Nicola, D'Costa, Alister, Chen, Bingshu E., Yao, Cindy Q., Boutros, Paul C., Burnell, Margot, Levine, Mark N., O'Brien, Patti, Shepherd, Lois, Bartlett, John M.S.
Publicado en Oncotarget (2016)

Targeted proteomics identifies liquid-biopsy signatures for extracapsular prostate cancer

por Kim, Yunee, Jeon, Jouhyun, Mejia, Salvador, Yao, Cindy Q, Ignatchenko, Vladimir, Nyalwidhe, Julius O, Gramolini, Anthony O, Lance, Raymond S, Troyer, Dean A, Drake, Richard R, Boutros, Paul C, Semmes, O. John, Kislinger, Thomas
Publicado en Nat Commun (2016)

Downregulation of histone H2A and H2B pathways is associated with anthracycline sensitivity in breast cancer

por Braunstein, Marsela, Liao, Linda, Lyttle, Nicola, Lobo, Nazleen, Taylor, Karen J., Krzyzanowski, Paul M., Kalatskaya, Irina, Yao, Cindy Q., Stein, Lincoln D., Boutros, Paul C., Twelves, Christopher J., Marcellus, Richard, Bartlett, John M. S., Spears, Melanie
Publicado en Breast Cancer Res (2016)

Identification of Differentially Expressed Proteins in Direct Expressed Prostatic Secretions of Men with Organ-confined Versus Extracapsular Prostate Cancer

por Kim, Yunee, Ignatchenko, Vladimir, Yao, Cindy Q., Kalatskaya, Irina, Nyalwidhe, Julius O., Lance, Raymond S., Gramolini, Anthony O., Troyer, Dean A., Stein, Lincoln D., Boutros, Paul C., Medin, Jeffrey A., Semmes, O. John, Drake, Richard R., Kislinger, Thomas
Publicado 2012

Molecular stratification of early breast cancer identifies drug targets to drive stratified medicine

por Bayani, Jane, Yao, Cindy Q., Quintayo, Mary Anne, Yan, Fu, Haider, Syed, D’Costa, Alister, Brookes, Cassandra L., van de Velde, Cornelis J. H., Hasenburg, Annette, Kieback, Dirk G., Markopoulos, Christos, Dirix, Luc, Seynaeve, Caroline, Rea, Daniel, Boutros, Paul C., Bartlett, John M. S.
Publicado en NPJ Breast Cancer (2017)

Comparative survival analysis of multiparametric tests—when molecular tests disagree—A TEAM Pathology study

por Bartlett, John M. S., Bayani, Jane, Kornaga, Elizabeth, Xu, Keying, Pond, Greg R., Piper, Tammy, Mallon, Elizabeth, Yao, Cindy Q., Boutros, Paul C., Hasenburg, Annette, Dunn, J. A., Markopoulos, Christos, Dirix, Luc, Seynaeve, Caroline, van de Velde, Cornelis J. H., Stein, Robert C., Rea, Daniel
Publicado en NPJ Breast Cancer (2021)

Compendium of TCDD-mediated transcriptomic response datasets in mammalian model systems

por Prokopec, Stephenie D., Houlahan, Kathleen E., Sun, Ren X., Watson, John D., Yao, Cindy Q., Lee, Jamie, P’ng, Christine, Pang, Renee, Wu, Alexander H., Chong, Lauren C., Smith, Ashley B., Harding, Nicholas J., Moffat, Ivy D., Lindén, Jere, Lensu, Sanna, Okey, Allan B., Pohjanvirta, Raimo, Boutros, Paul C.
Publicado en BMC Genomics (2017)

Temporal Stability and Prognostic Biomarker Potential of the Prostate Cancer Urine miRNA Transcriptome

por Jeon, Jouhyun, Olkhov-Mitsel, Ekaterina, Xie, Honglei, Yao, Cindy Q, Zhao, Fang, Jahangiri, Sahar, Cuizon, Carmelle, Scarcello, Seville, Jeyapala, Renu, Watson, John D, Fraser, Michael, Ray, Jessica, Commisso, Kristina, Loblaw, Andrew, Fleshner, Neil E, Bristow, Robert G, Downes, Michelle, Vesprini, Danny, Liu, Stanley, Bapat, Bharati, Boutros, Paul C
Publicado en J Natl Cancer Inst (2019)

Hypoxia promotes stem cell phenotypes and poor prognosis through epigenetic regulation of DICER

por van den Beucken, Twan, Koch, Elizabeth, Chu, Kenneth, Rupaimoole, Rajesha, Prickaerts, Peggy, Adriaens, Michiel, Voncken, Jan Willem, Harris, Adrian L., Buffa, Francesca M., Haider, Syed, Starmans, Maud H.W., Yao, Cindy Q., Ivan, Mircea, Ivan, Cristina, Pecot, Chad V., Boutros, Paul C., Sood, Anil K., Koritzinsky, Marianne, Wouters, Bradly G.
Publicado en Nat Commun (2014)

Pathway-based subnetworks enable cross-disease biomarker discovery

por Haider, Syed, Yao, Cindy Q., Sabine, Vicky S., Grzadkowski, Michal, Stimper, Vincent, Starmans, Maud H. W., Wang, Jianxin, Nguyen, Francis, Moon, Nathalie C., Lin, Xihui, Drake, Camilla, Crozier, Cheryl A., Brookes, Cassandra L., van de Velde, Cornelis J. H., Hasenburg, Annette, Kieback, Dirk G., Markopoulos, Christos J., Dirix, Luc Y., Seynaeve, Caroline, Rea, Daniel W., Kasprzyk, Arek, Lambin, Philippe, Lio’, Pietro, Bartlett, John M. S., Boutros, Paul C.
Publicado en Nat Commun (2018)

The Proteogenomic Landscape of Curable Prostate Cancer

por Sinha, Ankit, Huang, Vincent, Livingstone, Julie, Wang, Jenny, Fox, Natalie S., Kurganovs, Natalie, Ignatchenko, Vladimir, Fritsch, Katharina, Donmez, Nilgun, Heisler, Lawrence E., Shiah, Yu-Jia, Yao, Cindy Q., Alfaro, Javier A., Volik, Stas, Lapuk, Anna, Fraser, Michael, Kron, Ken, Murison, Alex, Lupien, Mathieu, Sahinalp, Cenk, Collins, Colin C., Tetu, Bernard, Masoomian, Mehdi, Berman, David M., van der Kwast, Theodorus, Bristow, Robert G., Kislinger, Thomas, Boutros, Paul C.
Publicado en Cancer Cell (2019)

BPG: Seamless, automated and interactive visualization of scientific data

por P’ng, Christine, Green, Jeffrey, Chong, Lauren C., Waggott, Daryl, Prokopec, Stephenie D., Shamsi, Mehrdad, Nguyen, Francis, Mak, Denise Y. F., Lam, Felix, Albuquerque, Marco A., Wu, Ying, Jung, Esther H., Starmans, Maud H. W., Chan-Seng-Yue, Michelle A., Yao, Cindy Q., Liang, Bianca, Lalonde, Emilie, Haider, Syed, Simone, Nicole A., Sendorek, Dorota, Chu, Kenneth C., Moon, Nathalie C., Fox, Natalie S., Grzadkowski, Michal R., Harding, Nicholas J., Fung, Clement, Murdoch, Amanda R., Houlahan, Kathleen E., Wang, Jianxin, Garcia, David R., de Borja, Richard, Sun, Ren X., Lin, Xihui, Chen, Gregory M., Lu, Aileen, Shiah, Yu-Jia, Zia, Amin, Kearns, Ryan, Boutros, Paul C.
Publicado en BMC Bioinformatics (2019)

Genome-wide germline correlates of the epigenetic landscape of prostate cancer

por Houlahan, Kathleen E, Shiah, Yu-Jia, Gusev, Alexander, Yuan, Jiapei, Ahmed, Musaddeque, Shetty, Anamay, Ramanand, Susmita G, Yao, Cindy Q, Bell, Connor, O'Connor, Edward, Huang, Vincent, Fraser, Michael, Heisler, Lawrence E, Livingstone, Julie, Yamaguchi, Takafumi N, Rouette, Alexandre, Foucal, Adrien, Espiritu, Shadrielle Melijah G, Sinha, Ankit, Sam, Michelle, Timms, Lee, Johns, Jeremy, Wong, Ada, Murison, Alex, Orain, Michele, Picard, Valerie, Hovington, Helene, Bergeron, Alain, Lacombe, Louis, Lupien, Mathieu, Fradet, Yves, Tetu, Bernard, McPherson, John D., Pasaniuc, Bogdan, Kislinger, Thomas, Chua, Melvin L K, Pomerantz, Mark M., van der Kwast, Theodorus, Freedman, Matthew L., Mani, Ram S., He, Housheng H., Bristow, Robert G, Boutros, Paul C.
Publicado en Nat Med (2019)