The transcriptomic profile of ovarian cancer grading

par Yao, Cindy Q, Nguyen, Francis, Haider, Syed, Starmans, Maud H W, Lambin, Philippe, Boutros, Paul C
Publié dans Cancer Med (2015)

NanoStringNormCNV: pre-processing of NanoString CNV data

par Sendorek, Dorota H, Lalonde, Emilie, Yao, Cindy Q, Sabelnykova, Veronica Y, Bristow, Robert G, Boutros, Paul C
Publié dans Bioinformatics (2018)

Deregulation of the spindle assembly checkpoint is associated with paclitaxel resistance in ovarian cancer

par Chong, Taryne, Sarac, Amila, Yao, Cindy Q., Liao, Linda, Lyttle, Nicola, Boutros, Paul C., Bartlett, John M. S., Spears, Melanie
Publié dans J Ovarian Res (2018)

2,3,7,8-Tetrachlorodibenzo-p-dioxin modifies alternative splicing in mouse liver

par Villaseñor-Altamirano, Ana B., Watson, John D., Prokopec, Stephenie D., Yao, Cindy Q., Boutros, Paul C., Pohjanvirta, Raimo, Valdés-Flores, Jesús, Elizondo, Guillermo
Publié dans PLoS One (2019)

Computational approaches to support comparative analysis of multiparametric tests: Modelling versus Training

par Bartlett, John M. S., Bayani, Jane, Kornaga, Elizabeth N., Danaher, Patrick, Crozier, Cheryl, Piper, Tammy, Yao, Cindy Q., Dunn, Janet A., Boutros, Paul C., Stein, Robert C.
Publié dans PLoS One (2020)

A four gene signature of chromosome instability (CIN4) predicts for benefit from taxanes in the NCIC-CTG MA21 clinical trial

par Spears, Melanie, Lyttle, Nicola, D'Costa, Alister, Chen, Bingshu E., Yao, Cindy Q., Boutros, Paul C., Burnell, Margot, Levine, Mark N., O'Brien, Patti, Shepherd, Lois, Bartlett, John M.S.
Publié dans Oncotarget (2016)

Targeted proteomics identifies liquid-biopsy signatures for extracapsular prostate cancer

par Kim, Yunee, Jeon, Jouhyun, Mejia, Salvador, Yao, Cindy Q, Ignatchenko, Vladimir, Nyalwidhe, Julius O, Gramolini, Anthony O, Lance, Raymond S, Troyer, Dean A, Drake, Richard R, Boutros, Paul C, Semmes, O. John, Kislinger, Thomas
Publié dans Nat Commun (2016)

Downregulation of histone H2A and H2B pathways is associated with anthracycline sensitivity in breast cancer

par Braunstein, Marsela, Liao, Linda, Lyttle, Nicola, Lobo, Nazleen, Taylor, Karen J., Krzyzanowski, Paul M., Kalatskaya, Irina, Yao, Cindy Q., Stein, Lincoln D., Boutros, Paul C., Twelves, Christopher J., Marcellus, Richard, Bartlett, John M. S., Spears, Melanie
Publié dans Breast Cancer Res (2016)

Identification of Differentially Expressed Proteins in Direct Expressed Prostatic Secretions of Men with Organ-confined Versus Extracapsular Prostate Cancer

par Kim, Yunee, Ignatchenko, Vladimir, Yao, Cindy Q., Kalatskaya, Irina, Nyalwidhe, Julius O., Lance, Raymond S., Gramolini, Anthony O., Troyer, Dean A., Stein, Lincoln D., Boutros, Paul C., Medin, Jeffrey A., Semmes, O. John, Drake, Richard R., Kislinger, Thomas
Publié 2012

Molecular stratification of early breast cancer identifies drug targets to drive stratified medicine

par Bayani, Jane, Yao, Cindy Q., Quintayo, Mary Anne, Yan, Fu, Haider, Syed, D’Costa, Alister, Brookes, Cassandra L., van de Velde, Cornelis J. H., Hasenburg, Annette, Kieback, Dirk G., Markopoulos, Christos, Dirix, Luc, Seynaeve, Caroline, Rea, Daniel, Boutros, Paul C., Bartlett, John M. S.
Publié dans NPJ Breast Cancer (2017)

Comparative survival analysis of multiparametric tests—when molecular tests disagree—A TEAM Pathology study

par Bartlett, John M. S., Bayani, Jane, Kornaga, Elizabeth, Xu, Keying, Pond, Greg R., Piper, Tammy, Mallon, Elizabeth, Yao, Cindy Q., Boutros, Paul C., Hasenburg, Annette, Dunn, J. A., Markopoulos, Christos, Dirix, Luc, Seynaeve, Caroline, van de Velde, Cornelis J. H., Stein, Robert C., Rea, Daniel
Publié dans NPJ Breast Cancer (2021)

Compendium of TCDD-mediated transcriptomic response datasets in mammalian model systems

par Prokopec, Stephenie D., Houlahan, Kathleen E., Sun, Ren X., Watson, John D., Yao, Cindy Q., Lee, Jamie, P’ng, Christine, Pang, Renee, Wu, Alexander H., Chong, Lauren C., Smith, Ashley B., Harding, Nicholas J., Moffat, Ivy D., Lindén, Jere, Lensu, Sanna, Okey, Allan B., Pohjanvirta, Raimo, Boutros, Paul C.
Publié dans BMC Genomics (2017)

Temporal Stability and Prognostic Biomarker Potential of the Prostate Cancer Urine miRNA Transcriptome

par Jeon, Jouhyun, Olkhov-Mitsel, Ekaterina, Xie, Honglei, Yao, Cindy Q, Zhao, Fang, Jahangiri, Sahar, Cuizon, Carmelle, Scarcello, Seville, Jeyapala, Renu, Watson, John D, Fraser, Michael, Ray, Jessica, Commisso, Kristina, Loblaw, Andrew, Fleshner, Neil E, Bristow, Robert G, Downes, Michelle, Vesprini, Danny, Liu, Stanley, Bapat, Bharati, Boutros, Paul C
Publié dans J Natl Cancer Inst (2019)

Hypoxia promotes stem cell phenotypes and poor prognosis through epigenetic regulation of DICER

par van den Beucken, Twan, Koch, Elizabeth, Chu, Kenneth, Rupaimoole, Rajesha, Prickaerts, Peggy, Adriaens, Michiel, Voncken, Jan Willem, Harris, Adrian L., Buffa, Francesca M., Haider, Syed, Starmans, Maud H.W., Yao, Cindy Q., Ivan, Mircea, Ivan, Cristina, Pecot, Chad V., Boutros, Paul C., Sood, Anil K., Koritzinsky, Marianne, Wouters, Bradly G.
Publié dans Nat Commun (2014)

Pathway-based subnetworks enable cross-disease biomarker discovery

par Haider, Syed, Yao, Cindy Q., Sabine, Vicky S., Grzadkowski, Michal, Stimper, Vincent, Starmans, Maud H. W., Wang, Jianxin, Nguyen, Francis, Moon, Nathalie C., Lin, Xihui, Drake, Camilla, Crozier, Cheryl A., Brookes, Cassandra L., van de Velde, Cornelis J. H., Hasenburg, Annette, Kieback, Dirk G., Markopoulos, Christos J., Dirix, Luc Y., Seynaeve, Caroline, Rea, Daniel W., Kasprzyk, Arek, Lambin, Philippe, Lio’, Pietro, Bartlett, John M. S., Boutros, Paul C.
Publié dans Nat Commun (2018)

The Proteogenomic Landscape of Curable Prostate Cancer

par Sinha, Ankit, Huang, Vincent, Livingstone, Julie, Wang, Jenny, Fox, Natalie S., Kurganovs, Natalie, Ignatchenko, Vladimir, Fritsch, Katharina, Donmez, Nilgun, Heisler, Lawrence E., Shiah, Yu-Jia, Yao, Cindy Q., Alfaro, Javier A., Volik, Stas, Lapuk, Anna, Fraser, Michael, Kron, Ken, Murison, Alex, Lupien, Mathieu, Sahinalp, Cenk, Collins, Colin C., Tetu, Bernard, Masoomian, Mehdi, Berman, David M., van der Kwast, Theodorus, Bristow, Robert G., Kislinger, Thomas, Boutros, Paul C.
Publié dans Cancer Cell (2019)

BPG: Seamless, automated and interactive visualization of scientific data

par P’ng, Christine, Green, Jeffrey, Chong, Lauren C., Waggott, Daryl, Prokopec, Stephenie D., Shamsi, Mehrdad, Nguyen, Francis, Mak, Denise Y. F., Lam, Felix, Albuquerque, Marco A., Wu, Ying, Jung, Esther H., Starmans, Maud H. W., Chan-Seng-Yue, Michelle A., Yao, Cindy Q., Liang, Bianca, Lalonde, Emilie, Haider, Syed, Simone, Nicole A., Sendorek, Dorota, Chu, Kenneth C., Moon, Nathalie C., Fox, Natalie S., Grzadkowski, Michal R., Harding, Nicholas J., Fung, Clement, Murdoch, Amanda R., Houlahan, Kathleen E., Wang, Jianxin, Garcia, David R., de Borja, Richard, Sun, Ren X., Lin, Xihui, Chen, Gregory M., Lu, Aileen, Shiah, Yu-Jia, Zia, Amin, Kearns, Ryan, Boutros, Paul C.
Publié dans BMC Bioinformatics (2019)

Genome-wide germline correlates of the epigenetic landscape of prostate cancer

par Houlahan, Kathleen E, Shiah, Yu-Jia, Gusev, Alexander, Yuan, Jiapei, Ahmed, Musaddeque, Shetty, Anamay, Ramanand, Susmita G, Yao, Cindy Q, Bell, Connor, O'Connor, Edward, Huang, Vincent, Fraser, Michael, Heisler, Lawrence E, Livingstone, Julie, Yamaguchi, Takafumi N, Rouette, Alexandre, Foucal, Adrien, Espiritu, Shadrielle Melijah G, Sinha, Ankit, Sam, Michelle, Timms, Lee, Johns, Jeremy, Wong, Ada, Murison, Alex, Orain, Michele, Picard, Valerie, Hovington, Helene, Bergeron, Alain, Lacombe, Louis, Lupien, Mathieu, Fradet, Yves, Tetu, Bernard, McPherson, John D., Pasaniuc, Bogdan, Kislinger, Thomas, Chua, Melvin L K, Pomerantz, Mark M., van der Kwast, Theodorus, Freedman, Matthew L., Mani, Ram S., He, Housheng H., Bristow, Robert G, Boutros, Paul C.
Publié dans Nat Med (2019)