SMuRF: a novel tool to identify regulatory elements enriched for somatic point mutations

by Guilhamon, Paul, Lupien, Mathieu
Published in BMC Bioinformatics (2018)

Laying a solid foundation for Manhattan ‘Setting the functional basis for the post-GWAS era’

by Zhang, Xiaoyang, Bailey, Swneke D., Lupien, Mathieu
Published 2014

Emergence of the noncoding cancer genome: a target of genetic and epigenetic alterations

by Zhou, Stanley, Treloar, Aislinn E., Lupien, Mathieu
Published in Cancer Discov (2016)

Enhancer alterations in cancer: a source for a cell identity crisis

by Kron, Ken J, Bailey, Swneke D, Lupien, Mathieu
Published in Genome Med (2014)

PBX1 Genomic Pioneer Function Drives ERα Signaling Underlying Progression in Breast Cancer

by Magnani, Luca, Ballantyne, Elizabeth B., Zhang, Xiaoyang, Lupien, Mathieu
Published 2011

Large organized chromatin lysine domains help distinguish primitive from differentiated cell populations

by Madani Tonekaboni, Seyed Ali, Haibe-Kains, Benjamin, Lupien, Mathieu
Published in Nat Commun (2021)

Cancer heterogeneity: origins and implications for genetic association studies

by Urbach, Davnah, Lupien, Mathieu, Karagas, Margaret R., Moore, Jason H.
Published 2012

ABC: a tool to identify SNVs causing allele-specific transcription factor binding from ChIP-Seq experiments

by Bailey, Swneke D., Virtanen, Carl, Haibe-Kains, Benjamin, Lupien, Mathieu
Published in Bioinformatics (2015)

Genomic Collaboration of Estrogen Receptor α and Extracellular Signal-Regulated Kinase 2 in Regulating Gene and Proliferation Programs

by Madak-Erdogan, Zeynep, Lupien, Mathieu, Stossi, Fabio, Brown, Myles, Katzenellenbogen, Benita S.
Published 2011

Pioneer of prostate cancer: past, present and the future of FOXA1

by Teng, Mona, Zhou, Stanley, Cai, Changmeng, Lupien, Mathieu, He, Housheng Hansen
Published in Protein Cell (2020)

Overexpression of Activated Murine Notch1 and Notch3 in Transgenic Mice Blocks Mammary Gland Development and Induces Mammary Tumors

by Hu, Chunyan, Diévart, Anne, Lupien, Mathieu, Calvo, Ezequiel, Tremblay, Gilles, Jolicoeur, Paul
Published 2006

Exploiting tumor epigenetics to improve oncolytic virotherapy

by Forbes, Nicole E., Abdelbary, Hesham, Lupien, Mathieu, Bell, John C., Diallo, Jean-Simon
Published 2013

A global assessment of cancer genomic alterations in epigenetic mechanisms

by Shah, Muhammad A, Denton, Emily L, Arrowsmith, Cheryl H, Lupien, Mathieu, Schapira, Matthieu
Published in Epigenetics Chromatin (2014)

Organizing combinatorial transcription factor recruitment at cis-regulatory modules

by Dubois-Chevalier, Julie, Mazrooei, Parisa, Lupien, Mathieu, Staels, Bart, Lefebvre, Philippe, Eeckhoute, Jérôme
Published in Transcription (2017)

Identifying clusters of cis-regulatory elements underpinning TAD structures and lineage-specific regulatory networks

by Madani Tonekaboni, Seyed Ali, Mazrooei, Parisa, Kofia, Victor, Haibe-Kains, Benjamin, Lupien, Mathieu
Published in Genome Res (2019)

Integrative functional genomics identifies an enhancer looping to the SOX9 gene disrupted by the 17q24.3 prostate cancer risk locus

by Zhang, Xiaoyang, Cowper-Sal·lari, Richard, Bailey, Swneke D., Moore, Jason H., Lupien, Mathieu
Published 2012

The histone variant H2A.Z is an important regulator of enhancer activity

by Brunelle, Mylène, Nordell Markovits, Alexei, Rodrigue, Sébastien, Lupien, Mathieu, Jacques, Pierre-Étienne, Gévry, Nicolas
Published in Nucleic Acids Res (2015)

Unique ERα Cistromes Control Cell Type-Specific Gene Regulation

by Krum, Susan A., Miranda-Carboni, Gustavo A., Lupien, Mathieu, Eeckhoute, Jerome, Carroll, Jason S., Brown, Myles
Published 2008

Layers of epistasis: genome-wide regulatory networks and network approaches to genome-wide association studies

by Cowper-Sal·lari, Richard, Cole, Michael D., Karagas, Margaret R., Lupien, Mathieu, Moore, Jason H.
Published 2010

Variant Set Enrichment: an R package to identify disease-associated functional genomic regions

by Ahmed, Musaddeque, Sallari, Richard C., Guo, Haiyang, Moore, Jason H., He, Housheng Hansen, Lupien, Mathieu
Published in BioData Min (2017)