HLA predictions from the bronchoalveolar lavage fluid samples of five patients at the early stage of the wuhan seafood market COVID-19 outbreak

le Warren, René L., Birol, Inanç
Foilsithe in ArXiv (2020)

HLA predictions from the bronchoalveolar lavage fluid and blood samples of eight COVID-19 patients at the pandemic onset

le Warren, René L, Birol, Inanç
Foilsithe in Bioinformatics (2020)

Retrospective in silico HLA predictions from COVID-19 patients reveal alleles associated with disease prognosis

le Warren, René L., Birol, Inanç
Foilsithe in medRxiv (2020)

Interactive SARS-COV-2 mutation timemaps

le Warren, René L., Birol, Inanç
Foilsithe in ArXiv (2020)

Interactive SARS-CoV-2 mutation timemaps

le Warren, René L., Birol, Inanc
Foilsithe in F1000Res (2021)

Targeted Assembly of Short Sequence Reads

le Warren, René L., Holt, Robert A.
Foilsithe 2011

Constructing large DNA segments by iterative clone recombination

le Smailus, Duane E., Warren, Rene L., Holt, Robert A.
Foilsithe 2008

NanoSim: nanopore sequence read simulator based on statistical characterization

le Yang, Chen, Chu, Justin, Warren, René L, Birol, Inanç
Foilsithe in Gigascience (2017)

Innovations and challenges in detecting long read overlaps: an evaluation of the state-of-the-art

le Chu, Justin, Mohamadi, Hamid, Warren, René L, Yang, Chen, Birol, Inanç
Foilsithe in Bioinformatics (2017)

ARCS: scaffolding genome drafts with linked reads

le Yeo, Sarah, Coombe, Lauren, Warren, René L, Chu, Justin, Birol, Inanç
Foilsithe in Bioinformatics (2018)

ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs

le Coombe, Lauren, Nikolić, Vladimir, Chu, Justin, Birol, Inanc, Warren, René L
Foilsithe in Bioinformatics (2020)

Assembling millions of short DNA sequences using SSAKE

le Warren, René L., Sutton, Granger G., Jones, Steven J. M., Holt, Robert A.
Foilsithe in Bioinformatics (2007)

Kollector: transcript-informed, targeted de novo assembly of gene loci

le Kucuk, Erdi, Chu, Justin, Vandervalk, Benjamin P, Hammond, S Austin, Warren, René L, Birol, Inanc
Foilsithe in Bioinformatics (2017)

Kollector: transcript-informed, targeted de novo assembly of gene loci

le Kucuk, Erdi, Chu, Justin, Vandervalk, Benjamin P, Austin Hammond, S, Warren, René L, Birol, Inanc
Foilsithe in Bioinformatics (2017)

ChopStitch: exon annotation and splice graph construction using transcriptome assembly and whole genome sequencing data

le Khan, Hamza, Mohamadi, Hamid, Vandervalk, Benjamin P, Warren, Rene L, Chu, Justin, Birol, Inanc
Foilsithe in Bioinformatics (2018)

Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data

le Hafezqorani, Saber, Yang, Chen, Lo, Theodora, Nip, Ka Ming, Warren, René L, Birol, Inanc
Foilsithe in Gigascience (2020)

Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing

le Freeman, J. Douglas, Warren, René L., Webb, John R., Nelson, Brad H., Holt, Robert A.
Foilsithe 2009

Sealer: a scalable gap-closing application for finishing draft genomes

le Paulino, Daniel, Warren, René L., Vandervalk, Benjamin P., Raymond, Anthony, Jackman, Shaun D., Birol, Inanç
Foilsithe in BMC Bioinformatics (2015)

RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes

le Nip, Ka Ming, Chiu, Readman, Yang, Chen, Chu, Justin, Mohamadi, Hamid, Warren, René L., Birol, Inanc
Foilsithe in Genome Res (2020)

Transcription of foreign DNA in Escherichia coli

le Warren, René L., Freeman, John D., Levesque, Roger C., Smailus, Duane E., Flibotte, Stephane, Holt, Robert A.
Foilsithe 2008