A two-stage approach for improved prediction of residue contact maps

Autor Vullo, Alessandro, Walsh, Ian, Pollastri, Gianluca
Vydáno 2006

DISULFIND: a disulfide bonding state and cysteine connectivity prediction server

Autor Ceroni, Alessio, Passerini, Andrea, Vullo, Alessandro, Frasconi, Paolo
Vydáno 2006

Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information

Autor Pollastri, Gianluca, Martin, Alberto JM, Mooney, Catherine, Vullo, Alessandro
Vydáno 2007

Spritz: a server for the prediction of intrinsically disordered regions in protein sequences using kernel machines

Autor Vullo, Alessandro, Bortolami, Oscar, Pollastri, Gianluca, Tosatto, Silvio C. E.
Vydáno 2006

Distill: a suite of web servers for the prediction of one-, two- and three-dimensional structural features of proteins

Autor Walsh Ian, Vullo Alessandro, Mooney Catherine, Martin Alberto JM, Baú Davide, Pollastri Gianluca
Vydáno 2006-09-01

Distill: a suite of web servers for the prediction of one-, two- and three-dimensional structural features of proteins

Autor Baú, Davide, Martin, Alberto JM, Mooney, Catherine, Vullo, Alessandro, Walsh, Ian, Pollastri, Gianluca
Vydáno 2006

Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks

Autor Walsh, Ian, Baù, Davide, Martin, Alberto JM, Mooney, Catherine, Vullo, Alessandro, Pollastri, Gianluca
Vydáno 2009

Ab initio and homology based prediction of protein domains by recursive neural networks

Autor Walsh, Ian, Martin, Alberto JM, Mooney, Catherine, Rubagotti, Enrico, Vullo, Alessandro, Pollastri, Gianluca
Vydáno 2009

CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs

Autor Walsh, Ian, Martin, Alberto J. M., Di Domenico, Tomàs, Vullo, Alessandro, Pollastri, Gianluca, Tosatto, Silvio C. E.
Vydáno 2011

The Ensembl REST API: Ensembl Data for Any Language

Autor Yates, Andrew, Beal, Kathryn, Keenan, Stephen, McLaren, William, Pignatelli, Miguel, Ritchie, Graham R. S., Ruffier, Magali, Taylor, Kieron, Vullo, Alessandro, Flicek, Paul
Vydáno v Bioinformatics (2015)

Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation

Autor Ruffier, Magali, Kähäri, Andreas, Komorowska, Monika, Keenan, Stephen, Laird, Matthew, Longden, Ian, Proctor, Glenn, Searle, Steve, Staines, Daniel, Taylor, Kieron, Vullo, Alessandro, Yates, Andrew, Zerbino, Daniel, Flicek, Paul
Vydáno v Database (Oxford) (2017)

Ensembl 2016

Autor Yates, Andrew, Akanni, Wasiu, Amode, M. Ridwan, Barrell, Daniel, Billis, Konstantinos, Carvalho-Silva, Denise, Cummins, Carla, Clapham, Peter, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E., Janacek, Sophie H., Johnson, Nathan, Juettemann, Thomas, Keenan, Stephen, Lavidas, Ilias, Martin, Fergal J., Maurel, Thomas, McLaren, William, Murphy, Daniel N., Nag, Rishi, Nuhn, Michael, Parker, Anne, Patricio, Mateus, Pignatelli, Miguel, Rahtz, Matthew, Riat, Harpreet Singh, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Wilder, Steven P., Zadissa, Amonida, Birney, Ewan, Harrow, Jennifer, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Spudich, Giulietta, Trevanion, Stephen J., Cunningham, Fiona, Aken, Bronwen L., Zerbino, Daniel R., Flicek, Paul
Vydáno v Nucleic Acids Res (2016)

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species

Autor Kersey, Paul Julian, Allen, James E, Allot, Alexis, Barba, Matthieu, Boddu, Sanjay, Bolt, Bruce J, Carvalho-Silva, Denise, Christensen, Mikkel, Davis, Paul, Grabmueller, Christoph, Kumar, Navin, Liu, Zicheng, Maurel, Thomas, Moore, Ben, McDowall, Mark D, Maheswari, Uma, Naamati, Guy, Newman, Victoria, Ong, Chuang Kee, Paulini, Michael, Pedro, Helder, Perry, Emily, Russell, Matthew, Sparrow, Helen, Tapanari, Electra, Taylor, Kieron, Vullo, Alessandro, Williams, Gareth, Zadissia, Amonida, Olson, Andrew, Stein, Joshua, Wei, Sharon, Tello-Ruiz, Marcela, Ware, Doreen, Luciani, Aurelien, Potter, Simon, Finn, Robert D, Urban, Martin, Hammond-Kosack, Kim E, Bolser, Dan M, De Silva, Nishadi, Howe, Kevin L, Langridge, Nicholas, Maslen, Gareth, Staines, Daniel Michael, Yates, Andrew
Vydáno v Nucleic Acids Res (2018)

Ensembl 2015

Autor Cunningham, Fiona, Amode, M. Ridwan, Barrell, Daniel, Beal, Kathryn, Billis, Konstantinos, Brent, Simon, Carvalho-Silva, Denise, Clapham, Peter, Coates, Guy, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E., Janacek, Sophie H., Johnson, Nathan, Juettemann, Thomas, Kähäri, Andreas K., Keenan, Stephen, Martin, Fergal J., Maurel, Thomas, McLaren, William, Murphy, Daniel N., Nag, Rishi, Overduin, Bert, Parker, Anne, Patricio, Mateus, Perry, Emily, Pignatelli, Miguel, Riat, Harpreet Singh, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Wilder, Steven P., Zadissa, Amonida, Aken, Bronwen L., Birney, Ewan, Harrow, Jennifer, Kinsella, Rhoda, Muffato, Matthieu, Ruffier, Magali, Searle, Stephen M.J., Spudich, Giulietta, Trevanion, Stephen J., Yates, Andy, Zerbino, Daniel R., Flicek, Paul
Vydáno v Nucleic Acids Res (2014)

Ensembl 2017

Autor Aken, Bronwen L., Achuthan, Premanand, Akanni, Wasiu, Amode, M. Ridwan, Bernsdorff, Friederike, Bhai, Jyothish, Billis, Konstantinos, Carvalho-Silva, Denise, Cummins, Carla, Clapham, Peter, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E., Janacek, Sophie H., Juettemann, Thomas, Keenan, Stephen, Laird, Matthew R., Lavidas, Ilias, Maurel, Thomas, McLaren, William, Moore, Benjamin, Murphy, Daniel N., Nag, Rishi, Newman, Victoria, Nuhn, Michael, Ong, Chuang Kee, Parker, Anne, Patricio, Mateus, Riat, Harpreet Singh, Sheppard, Daniel, Sparrow, Helen, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Walts, Brandon, Wilder, Steven P., Zadissa, Amonida, Kostadima, Myrto, Martin, Fergal J., Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Staines, Daniel M., Trevanion, Stephen J., Cunningham, Fiona, Yates, Andrew, Zerbino, Daniel R., Flicek, Paul
Vydáno v Nucleic Acids Res (2017)

Ensembl 2014

Autor Flicek, Paul, Amode, M. Ridwan, Barrell, Daniel, Beal, Kathryn, Billis, Konstantinos, Brent, Simon, Carvalho-Silva, Denise, Clapham, Peter, Coates, Guy, Fitzgerald, Stephen, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah, Johnson, Nathan, Juettemann, Thomas, Kähäri, Andreas K., Keenan, Stephen, Kulesha, Eugene, Martin, Fergal J., Maurel, Thomas, McLaren, William M., Murphy, Daniel N., Nag, Rishi, Overduin, Bert, Pignatelli, Miguel, Pritchard, Bethan, Pritchard, Emily, Riat, Harpreet S., Ruffier, Magali, Sheppard, Daniel, Taylor, Kieron, Thormann, Anja, Trevanion, Stephen J., Vullo, Alessandro, Wilder, Steven P., Wilson, Mark, Zadissa, Amonida, Aken, Bronwen L., Birney, Ewan, Cunningham, Fiona, Harrow, Jennifer, Herrero, Javier, Hubbard, Tim J.P., Kinsella, Rhoda, Muffato, Matthieu, Parker, Anne, Spudich, Giulietta, Yates, Andy, Zerbino, Daniel R., Searle, Stephen M.J.
Vydáno 2014

Ensembl 2018

Autor Zerbino, Daniel R, Achuthan, Premanand, Akanni, Wasiu, Amode, M Ridwan, Barrell, Daniel, Bhai, Jyothish, Billis, Konstantinos, Cummins, Carla, Gall, Astrid, Girón, Carlos García, Gil, Laurent, Gordon, Leo, Haggerty, Leanne, Haskell, Erin, Hourlier, Thibaut, Izuogu, Osagie G, Janacek, Sophie H, Juettemann, Thomas, To, Jimmy Kiang, Laird, Matthew R, Lavidas, Ilias, Liu, Zhicheng, Loveland, Jane E, Maurel, Thomas, McLaren, William, Moore, Benjamin, Mudge, Jonathan, Murphy, Daniel N, Newman, Victoria, Nuhn, Michael, Ogeh, Denye, Ong, Chuang Kee, Parker, Anne, Patricio, Mateus, Riat, Harpreet Singh, Schuilenburg, Helen, Sheppard, Dan, Sparrow, Helen, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Walts, Brandon, Zadissa, Amonida, Frankish, Adam, Hunt, Sarah E, Kostadima, Myrto, Langridge, Nicholas, Martin, Fergal J, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Staines, Dan M, Trevanion, Stephen J, Aken, Bronwen L, Cunningham, Fiona, Yates, Andrew, Flicek, Paul
Vydáno v Nucleic Acids Res (2018)

Ensembl 2019

Autor Cunningham, Fiona, Achuthan, Premanand, Akanni, Wasiu, Allen, James, Amode, M Ridwan, Armean, Irina M, Bennett, Ruth, Bhai, Jyothish, Billis, Konstantinos, Boddu, Sanjay, Cummins, Carla, Davidson, Claire, Dodiya, Kamalkumar Jayantilal, Gall, Astrid, Girón, Carlos García, Gil, Laurent, Grego, Tiago, Haggerty, Leanne, Haskell, Erin, Hourlier, Thibaut, Izuogu, Osagie G, Janacek, Sophie H, Juettemann, Thomas, Kay, Mike, Laird, Matthew R, Lavidas, Ilias, Liu, Zhicheng, Loveland, Jane E, Marugán, José C, Maurel, Thomas, McMahon, Aoife C, Moore, Benjamin, Morales, Joannella, Mudge, Jonathan M, Nuhn, Michael, Ogeh, Denye, Parker, Anne, Parton, Andrew, Patricio, Mateus, Abdul Salam, Ahamed Imran, Schmitt, Bianca M, Schuilenburg, Helen, Sheppard, Dan, Sparrow, Helen, Stapleton, Eloise, Szuba, Marek, Taylor, Kieron, Threadgold, Glen, Thormann, Anja, Vullo, Alessandro, Walts, Brandon, Winterbottom, Andrea, Zadissa, Amonida, Chakiachvili, Marc, Frankish, Adam, Hunt, Sarah E, Kostadima, Myrto, Langridge, Nick, Martin, Fergal J, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Staines, Daniel M, Trevanion, Stephen J, Aken, Bronwen L, Yates, Andrew D, Zerbino, Daniel R, Flicek, Paul
Vydáno v Nucleic Acids Res (2019)

Ensembl 2020

Autor Yates, Andrew D, Achuthan, Premanand, Akanni, Wasiu, Allen, James, Allen, Jamie, Alvarez-Jarreta, Jorge, Amode, M Ridwan, Armean, Irina M, Azov, Andrey G, Bennett, Ruth, Bhai, Jyothish, Billis, Konstantinos, Boddu, Sanjay, Marugán, José Carlos, Cummins, Carla, Davidson, Claire, Dodiya, Kamalkumar, Fatima, Reham, Gall, Astrid, Giron, Carlos Garcia, Gil, Laurent, Grego, Tiago, Haggerty, Leanne, Haskell, Erin, Hourlier, Thibaut, Izuogu, Osagie G, Janacek, Sophie H, Juettemann, Thomas, Kay, Mike, Lavidas, Ilias, Le, Tuan, Lemos, Diana, Martinez, Jose Gonzalez, Maurel, Thomas, McDowall, Mark, McMahon, Aoife, Mohanan, Shamika, Moore, Benjamin, Nuhn, Michael, Oheh, Denye N, Parker, Anne, Parton, Andrew, Patricio, Mateus, Sakthivel, Manoj Pandian, Abdul Salam, Ahamed Imran, Schmitt, Bianca M, Schuilenburg, Helen, Sheppard, Dan, Sycheva, Mira, Szuba, Marek, Taylor, Kieron, Thormann, Anja, Threadgold, Glen, Vullo, Alessandro, Walts, Brandon, Winterbottom, Andrea, Zadissa, Amonida, Chakiachvili, Marc, Flint, Bethany, Frankish, Adam, Hunt, Sarah E, IIsley, Garth, Kostadima, Myrto, Langridge, Nick, Loveland, Jane E, Martin, Fergal J, Morales, Joannella, Mudge, Jonathan M, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Trevanion, Stephen J, Cunningham, Fiona, Howe, Kevin L, Zerbino, Daniel R, Flicek, Paul
Vydáno v Nucleic Acids Res (2020)