Complete Genome Sequence of the WHO International Standard for HIV-1 RNA Determined by Deep Sequencing

por Gall, Astrid, Morris, Clare, Kellam, Paul, Berry, Neil
Publicado 2014

Accessing Livestock Resources in Ensembl

por Martin, Fergal J., Gall, Astrid, Szpak, Michal, Flicek, Paul
Publicado en Front Genet (2021)

Universal Primer Set for Amplification and Sequencing of HA(0) Cleavage Sites of All Influenza A Viruses

por Gall, Astrid, Hoffmann, Bernd, Harder, Timm, Grund, Christian, Beer, Martin
Publicado 2008

Design and Validation of a Microarray for Detection, Hemagglutinin Subtyping, and Pathotyping of Avian Influenza Viruses

por Gall, Astrid, Hoffmann, Bernd, Harder, Timm, Grund, Christian, Höper, Dirk, Beer, Martin
Publicado 2009

Rapid and Highly Sensitive Neuraminidase Subtyping of Avian Influenza Viruses by Use of a Diagnostic DNA Microarray

por Gall, Astrid, Hoffmann, Bernd, Harder, Timm, Grund, Christian, Ehricht, Ralf, Beer, Martin
Publicado 2009

Host Genetic Variants and Gene Expression Patterns Associated with Epstein-Barr Virus Copy Number in Lymphoblastoid Cell Lines

por Houldcroft, Charlotte J., Petrova, Velislava, Liu, Jimmy Z., Frampton, Dan, Anderson, Carl A., Gall, Astrid, Kellam, Paul
Publicado 2014

Universal Amplification, Next-Generation Sequencing, and Assembly of HIV-1 Genomes

por Gall, Astrid, Ferns, Bridget, Morris, Clare, Watson, Simon, Cotten, Matthew, Robinson, Mark, Berry, Neil, Pillay, Deenan, Kellam, Paul
Publicado 2012

PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity

por Wymant, Chris, Hall, Matthew, Ratmann, Oliver, Bonsall, David, Golubchik, Tanya, de Cesare, Mariateresa, Gall, Astrid, Cornelissen, Marion, Fraser, Christophe
Publicado en Mol Biol Evol (2018)

Scripting Analyses of Genomes in Ensembl Plants

por Contreras-Moreira, Bruno, Naamati, Guy, Rosello, Marc, Allen, James E., Hunt, Sarah E., Muffato, Matthieu, Gall, Astrid, Flicek, Paul
Publicado en Methods Mol Biol (2022)

Disease progression despite protective HLA expression in an HIV-infected transmission pair

por Brener, Jacqui, Gall, Astrid, Batorsky, Rebecca, Riddell, Lynn, Buus, Soren, Leitman, Ellen, Kellam, Paul, Allen, Todd, Goulder, Philip, Matthews, Philippa C
Publicado en Retrovirology (2015)

Coalescent Inference Using Serially Sampled, High-Throughput Sequencing Data from Intrahost HIV Infection

por Dialdestoro, Kevin, Sibbesen, Jonas Andreas, Maretty, Lasse, Raghwani, Jayna, Gall, Astrid, Kellam, Paul, Pybus, Oliver G., Hein, Jotun, Jenkins, Paul A.
Publicado en Genetics (2016)

IVA: accurate de novo assembly of RNA virus genomes

por Hunt, Martin, Gall, Astrid, Ong, Swee Hoe, Brener, Jacqui, Ferns, Bridget, Goulder, Philip, Nastouli, Eleni, Keane, Jacqueline A., Kellam, Paul, Otto, Thomas D.
Publicado en Bioinformatics (2015)

Dynamics of immunoglobulin sequence diversity in HIV-1 infected individuals

por Hoehn, Kenneth B., Gall, Astrid, Bashford-Rogers, Rachael, Fidler, S. J., Kaye, S., Weber, J. N., McClure, M. O., Kellam, Paul, Pybus, Oliver G.
Publicado en Philos Trans R Soc Lond B Biol Sci (2015)

Restriction of V3 region sequence divergence in the HIV-1 envelope gene during antiretroviral treatment in a cohort of recent seroconverters

por Gall, Astrid, Kaye, Steve, Hué, Stéphane, Bonsall, David, Rance, Richard, Baillie, Gregory J, Fidler, Sarah J, Weber, Jonathan N, McClure, Myra O, Kellam, Paul
Publicado 2013

Rapid HIV disease progression following superinfection in an HLA-B*27:05/B*57:01-positive transmission recipient

por Brener, Jacqui, Gall, Astrid, Hurst, Jacob, Batorsky, Rebecca, Lavandier, Nora, Chen, Fabian, Edwards, Anne, Bolton, Chrissy, Dsouza, Reena, Allen, Todd, Pybus, Oliver G., Kellam, Paul, Matthews, Philippa C., Goulder, Philip J. R.
Publicado en Retrovirology (2018)

Disease-associated XMRV sequences are consistent with laboratory contamination

por Hué, Stéphane, Gray, Eleanor R, Gall, Astrid, Katzourakis, Aris, Tan, Choon Ping, Houldcroft, Charlotte J, McLaren, Stuart, Pillay, Deenan, Futreal, Andrew, Garson, Jeremy A, Pybus, Oliver G, Kellam, Paul, Towers, Greg J
Publicado 2010

Genome-wide evolutionary dynamics of influenza B viruses on a global scale

por Langat, Pinky, Raghwani, Jayna, Dudas, Gytis, Bowden, Thomas A., Edwards, Stephanie, Gall, Astrid, Bedford, Trevor, Rambaut, Andrew, Daniels, Rodney S., Russell, Colin A., Pybus, Oliver G., McCauley, John, Kellam, Paul, Watson, Simon J.
Publicado en PLoS Pathog (2017)

Evolutionary Dynamics of Local Pandemic H1N1/2009 Influenza Virus Lineages Revealed by Whole-Genome Analysis

por Baillie, Gregory J., Galiano, Monica, Agapow, Paul-Michael, Myers, Richard, Chiam, Rachael, Gall, Astrid, Palser, Anne L., Watson, Simon J., Hedge, Jessica, Underwood, Anthony, Platt, Steven, McLean, Estelle, Pebody, Richard G., Rambaut, Andrew, Green, Jonathan, Daniels, Rod, Pybus, Oliver G., Kellam, Paul, Zambon, Maria
Publicado 2012

Inferring HIV-1 transmission networks and sources of epidemic spread in Africa with deep-sequence phylogenetic analysis

por Ratmann, Oliver, Grabowski, M. Kate, Hall, Matthew, Golubchik, Tanya, Wymant, Chris, Abeler-Dörner, Lucie, Bonsall, David, Hoppe, Anne, Brown, Andrew Leigh, de Oliveira, Tulio, Gall, Astrid, Kellam, Paul, Pillay, Deenan, Kagaayi, Joseph, Kigozi, Godfrey, Quinn, Thomas C., Wawer, Maria J., Laeyendecker, Oliver, Serwadda, David, Gray, Ronald H., Fraser, Christophe
Publicado en Nat Commun (2019)

Pervasive and non-random recombination in near full-length HIV genomes from Uganda

por Grant, Heather E, Hodcroft, Emma B, Ssemwanga, Deogratius, Kitayimbwa, John M, Yebra, Gonzalo, Esquivel Gomez, Luis Roger, Frampton, Dan, Gall, Astrid, Kellam, Paul, de Oliveira, Tulio, Bbosa, Nicholas, Nsubuga, Rebecca N, Kibengo, Freddie, Kwan, Tsz Ho, Lycett, Samantha, Kao, Rowland, Robertson, David L, Ratmann, Oliver, Fraser, Christophe, Pillay, Deenan, Kaleebu, Pontiano, Leigh Brown, Andrew J
Publicado en Virus Evol (2020)