GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications

по Laird, Matthew R., Langille, Morgan G.I., Brinkman, Fiona S.L.
Опубликовано в: Bioinformatics (2015)

PSORTdb—an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea

по Yu, Nancy Y., Laird, Matthew R., Spencer, Cory, Brinkman, Fiona S.L.
Опубликовано 2011

OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis

по Whiteside, Matthew D., Winsor, Geoffrey L., Laird, Matthew R., Brinkman, Fiona S. L.
Опубликовано 2013

PSORTdb: expanding the bacteria and archaea protein subcellular localization database to better reflect diversity in cell envelope structures

по Peabody, Michael A., Laird, Matthew R., Vlasschaert, Caitlyn, Lo, Raymond, Brinkman, Fiona S.L.
Опубликовано в: Nucleic Acids Res (2016)

IslandViewer update: improved genomic island discovery and visualization

по Dhillon, Bhavjinder K., Chiu, Terry A., Laird, Matthew R., Langille, Morgan G. I., Brinkman, Fiona S. L.
Опубликовано 2013

PSORTdb: a protein subcellular localization database for bacteria

по Rey, Sébastien, Acab, Michael, Gardy, Jennifer L., Laird, Matthew R., deFays, Katalin, Lambert, Christophe, Brinkman, Fiona S. L.
Опубликовано 2005

Improving the specificity of high-throughput ortholog prediction

по Fulton, Debra L, Li, Yvonne Y, Laird, Matthew R, Horsman, Benjamin GS, Roche, Fiona M, Brinkman, Fiona SL
Опубликовано 2006

IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets

по Bertelli, Claire, Laird, Matthew R, Williams, Kelly P, Lau, Britney Y, Hoad, Gemma, Winsor, Geoffrey L, Brinkman, Fiona SL
Опубликовано в: Nucleic Acids Res (2017)

MicrobeDB: a locally maintainable database of microbial genomic sequences

по Langille, Morgan G. I., Laird, Matthew R., Hsiao, William W. L., Chiu, Terry A., Eisen, Jonathan A., Brinkman, Fiona S. L.
Опубликовано 2012

PSORTdb 4.0: expanded and redesigned bacterial and archaeal protein subcellular localization database incorporating new secondary localizations

по Lau, Wing Yin Venus, Hoad, Gemma R, Jin, Vivian, Winsor, Geoffrey L, Madyan, Ashmeet, Gray, Kristen L, Laird, Matthew R, Lo, Raymond, Brinkman, Fiona S L
Опубликовано в: Nucleic Acids Res (2020)

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

по Yu, Nancy Y., Wagner, James R., Laird, Matthew R., Melli, Gabor, Rey, Sébastien, Lo, Raymond, Dao, Phuong, Sahinalp, S. Cenk, Ester, Martin, Foster, Leonard J., Brinkman, Fiona S. L.
Опубликовано 2010

InnateDB: systems biology of innate immunity and beyond—recent updates and continuing curation

по Breuer, Karin, Foroushani, Amir K., Laird, Matthew R., Chen, Carol, Sribnaia, Anastasia, Lo, Raymond, Winsor, Geoffrey L., Hancock, Robert E. W., Brinkman, Fiona S. L., Lynn, David J.
Опубликовано 2013

IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis

по Dhillon, Bhavjinder K., Laird, Matthew R., Shay, Julie A., Winsor, Geoffrey L., Lo, Raymond, Nizam, Fazmin, Pereira, Sheldon K., Waglechner, Nicholas, McArthur, Andrew G., Langille, Morgan G.I., Brinkman, Fiona S.L.
Опубликовано в: Nucleic Acids Res (2015)

Curating the innate immunity interactome

по Lynn, David J, Chan, Calvin, Naseer, Misbah, Yau, Melissa, Lo, Raymond, Sribnaia, Anastasia, Ring, Giselle, Que, Jaimmie, Wee, Kathleen, Winsor, Geoffrey L, Laird, Matthew R, Breuer, Karin, Foroushani, Amir K, Brinkman, Fiona SL, Hancock, Robert EW
Опубликовано 2010

InnateDB: facilitating systems-level analyses of the mammalian innate immune response

по Lynn, David J, Winsor, Geoffrey L, Chan, Calvin, Richard, Nicolas, Laird, Matthew R, Barsky, Aaron, Gardy, Jennifer L, Roche, Fiona M, Chan, Timothy H W, Shah, Naisha, Lo, Raymond, Naseer, Misbah, Que, Jaimmie, Yau, Melissa, Acab, Michael, Tulpan, Dan, Whiteside, Matthew D, Chikatamarla, Avinash, Mah, Bernadette, Munzner, Tamara, Hokamp, Karsten, Hancock, Robert E W, Brinkman, Fiona S L
Опубликовано 2008

Ensembl 2017

по Aken, Bronwen L., Achuthan, Premanand, Akanni, Wasiu, Amode, M. Ridwan, Bernsdorff, Friederike, Bhai, Jyothish, Billis, Konstantinos, Carvalho-Silva, Denise, Cummins, Carla, Clapham, Peter, Gil, Laurent, Girón, Carlos García, Gordon, Leo, Hourlier, Thibaut, Hunt, Sarah E., Janacek, Sophie H., Juettemann, Thomas, Keenan, Stephen, Laird, Matthew R., Lavidas, Ilias, Maurel, Thomas, McLaren, William, Moore, Benjamin, Murphy, Daniel N., Nag, Rishi, Newman, Victoria, Nuhn, Michael, Ong, Chuang Kee, Parker, Anne, Patricio, Mateus, Riat, Harpreet Singh, Sheppard, Daniel, Sparrow, Helen, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Walts, Brandon, Wilder, Steven P., Zadissa, Amonida, Kostadima, Myrto, Martin, Fergal J., Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Staines, Daniel M., Trevanion, Stephen J., Cunningham, Fiona, Yates, Andrew, Zerbino, Daniel R., Flicek, Paul
Опубликовано в: Nucleic Acids Res (2017)

Ensembl 2018

по Zerbino, Daniel R, Achuthan, Premanand, Akanni, Wasiu, Amode, M Ridwan, Barrell, Daniel, Bhai, Jyothish, Billis, Konstantinos, Cummins, Carla, Gall, Astrid, Girón, Carlos García, Gil, Laurent, Gordon, Leo, Haggerty, Leanne, Haskell, Erin, Hourlier, Thibaut, Izuogu, Osagie G, Janacek, Sophie H, Juettemann, Thomas, To, Jimmy Kiang, Laird, Matthew R, Lavidas, Ilias, Liu, Zhicheng, Loveland, Jane E, Maurel, Thomas, McLaren, William, Moore, Benjamin, Mudge, Jonathan, Murphy, Daniel N, Newman, Victoria, Nuhn, Michael, Ogeh, Denye, Ong, Chuang Kee, Parker, Anne, Patricio, Mateus, Riat, Harpreet Singh, Schuilenburg, Helen, Sheppard, Dan, Sparrow, Helen, Taylor, Kieron, Thormann, Anja, Vullo, Alessandro, Walts, Brandon, Zadissa, Amonida, Frankish, Adam, Hunt, Sarah E, Kostadima, Myrto, Langridge, Nicholas, Martin, Fergal J, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Staines, Dan M, Trevanion, Stephen J, Aken, Bronwen L, Cunningham, Fiona, Yates, Andrew, Flicek, Paul
Опубликовано в: Nucleic Acids Res (2018)

Ensembl 2019

по Cunningham, Fiona, Achuthan, Premanand, Akanni, Wasiu, Allen, James, Amode, M Ridwan, Armean, Irina M, Bennett, Ruth, Bhai, Jyothish, Billis, Konstantinos, Boddu, Sanjay, Cummins, Carla, Davidson, Claire, Dodiya, Kamalkumar Jayantilal, Gall, Astrid, Girón, Carlos García, Gil, Laurent, Grego, Tiago, Haggerty, Leanne, Haskell, Erin, Hourlier, Thibaut, Izuogu, Osagie G, Janacek, Sophie H, Juettemann, Thomas, Kay, Mike, Laird, Matthew R, Lavidas, Ilias, Liu, Zhicheng, Loveland, Jane E, Marugán, José C, Maurel, Thomas, McMahon, Aoife C, Moore, Benjamin, Morales, Joannella, Mudge, Jonathan M, Nuhn, Michael, Ogeh, Denye, Parker, Anne, Parton, Andrew, Patricio, Mateus, Abdul Salam, Ahamed Imran, Schmitt, Bianca M, Schuilenburg, Helen, Sheppard, Dan, Sparrow, Helen, Stapleton, Eloise, Szuba, Marek, Taylor, Kieron, Threadgold, Glen, Thormann, Anja, Vullo, Alessandro, Walts, Brandon, Winterbottom, Andrea, Zadissa, Amonida, Chakiachvili, Marc, Frankish, Adam, Hunt, Sarah E, Kostadima, Myrto, Langridge, Nick, Martin, Fergal J, Muffato, Matthieu, Perry, Emily, Ruffier, Magali, Staines, Daniel M, Trevanion, Stephen J, Aken, Bronwen L, Yates, Andrew D, Zerbino, Daniel R, Flicek, Paul
Опубликовано в: Nucleic Acids Res (2019)