Global Gene Expression Analysis of the Heat Shock Response in the Phytopathogen Xylella fastidiosa

Por Koide, Tie, Vêncio, Ricardo Z. N., Gomes, Suely L.
Publicado em 2006

Sifter-T: A scalable framework for phylogenomic probabilistic protein domain functional annotation

Por Almeida-E-Silva, Danillo C, Vêncio, Ricardo Z N
Publicado no BMC Bioinformatics (2015)

Global Gene Expression Analysis during Germination in the Chytridiomycete Blastocladiella emersonii

Por Salem-Izacc, Silvia M., Koide, Tie, Vêncio, Ricardo Z. N., Gomes, Suely L.
Publicado em 2009

Transcription Start Site Associated RNAs (TSSaRNAs) Are Ubiquitous in All Domains of Life

Por Zaramela, Livia S., Vêncio, Ricardo Z. N., ten-Caten, Felipe, Baliga, Nitin S., Koide, Tie
Publicado em 2014

Gene Expression Profiling Reveals Regulation of ERK Phosphorylation by Androgen-Induced Tumor Suppressor U19/EAF2 in the Mouse Prostate

Por Su, Fei, Correa, Bruna R. S., Luo, Jianhua, Vencio, Ricardo Z. N., Pascal, Laura E., Wang, Zhou
Publicado em 2013

Bladder expression of CD cell surface antigens and cell-type-specific transcriptomes

Por Liu, Alvin Y., Vêncio, Ricardo Z. N., Page, Laura S., Ho, Melissa E., Loprieno, Michelle A., True, Lawrence D.
Publicado em 2012

Gene Discovery and Expression Profile Analysis through Sequencing of Expressed Sequence Tags from Different Developmental Stages of the Chytridiomycete Blastocladiella emersonii

Por Ribichich, Karina F., Salem-Izacc, Silvia M., Georg, Raphaela C., Vêncio, Ricardo Z. N., Navarro, Luci D., Gomes, Suely L.
Publicado em 2005

A Methodology for the Development of RESTful Semantic Web Services for Gene Expression Analysis

Por Guardia, Gabriela D. A., Pires, Luís Ferreira, Vêncio, Ricardo Z. N., Malmegrim, Kelen C. R., de Farias, Cléver R. G.
Publicado no PLoS One (2015)

Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea

Por Gomes-Filho, José Vicente, Zaramela, Livia Soares, Italiani, Valéria Cristina da Silva, Baliga, Nitin S, Vêncio, Ricardo Z N, Koide, Tie
Publicado no RNA Biol (2015)

The Iron Stimulon of Xylella fastidiosa Includes Genes for Type IV Pilus and Colicin V-Like Bacteriocins

Por Zaini, Paulo A., Fogaça, Andréa C., Lupo, Fernanda G. N., Nakaya, Helder I., Vêncio, Ricardo Z. N., da Silva, Aline M.
Publicado em 2008

Age-Dependent Signature of Metallothionein Expression in Primary CD4 T Cell Responses Is Due to Sustained Zinc Signaling

Por Lee, Won-Woo, Cui, Dapeng, Czesnikiewicz-Guzik, Marta, Vencio, Ricardo Z.N., Shmulevich, Ilya, Aderem, Alan, Weyand, Cornelia M., Goronzy, Jörg J.
Publicado em 2008

ProbMetab: an R package for Bayesian probabilistic annotation of LC–MS-based metabolomics

Por Silva, Ricardo R., Jourdan, Fabien, Salvanha, Diego M., Letisse, Fabien, Jamin, Emilien L., Guidetti-Gonzalez, Simone, Labate, Carlos A., Vêncio, Ricardo Z. N.
Publicado em 2014

Differential Inductive Signaling of CD90(+) Prostate Cancer-Associated Fibroblasts Compared to Normal Tissue Stromal Mesenchyme Cells

Por Pascal, Laura E., Ai, Junkui, Vêncio, Ricardo Z. N., Vêncio, Eneida F., Zhou, Yong, Page, Laura S., True, Lawrence D., Wang, Zhou, Liu, Alvin Y.
Publicado em 2011

Comparative Transcriptome Analysis of Listeria monocytogenes Strains of the Two Major Lineages Reveals Differences in Virulence, Cell Wall, and Stress Response

Por Severino , Patricia, Dussurget , Olivier, Vêncio, Ricardo Z. N., Dumas, Emilie, Garrido, Patricia, Padilla, Gabriel, Piveteau, Pascal, Lemaître, Jean-Paul, Kunst, Frank, Glaser, Philippe, Buchrieser, Carmen
Publicado em 2007

Conditional deletion of ELL2 induces murine prostate intraepithelial neoplasia

Por Pascal, Laura E., Masoodi, Khalid Z., Liu, June, Qiu, Xiaonan, Song, Qiong, Wang, Yujuan, Zang, Yachen, Yang, Tiejun, Wang, Yao, Rigatti, Lora H., Chandran, Uma, Colli, Leandro M., Vencio, Ricardo Z.N., Lu, Yi, Zhang, Jian, Wang, Zhou
Publicado no J Endocrinol (2017)

DNA Microarray-Based Genome Comparison of a Pathogenic and a Nonpathogenic Strain of Xylella fastidiosa Delineates Genes Important for Bacterial Virulence

Por Koide, Tie, Zaini, Paulo A., Moreira, Leandro M., Vêncio, Ricardo Z. N., Matsukuma, Adriana Y., Durham, Alan M., Teixeira, Diva C., El-Dorry, Hamza, Monteiro, Patrícia B., da Silva, Ana Claudia R., Verjovski-Almeida, Sergio, da Silva, Aline M., Gomes, Suely L.
Publicado em 2004

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Por Jiang, Yuxiang, Oron, Tal Ronnen, Clark, Wyatt T., Bankapur, Asma R., D’Andrea, Daniel, Lepore, Rosalba, Funk, Christopher S., Kahanda, Indika, Verspoor, Karin M., Ben-Hur, Asa, Koo, Da Chen Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed M. E., Martelli, Pier Luigi, Profiti, Giuseppe, Casadio, Rita, Cao, Renzhi, Zhong, Zhaolong, Cheng, Jianlin, Altenhoff, Adrian, Skunca, Nives, Dessimoz, Christophe, Dogan, Tunca, Hakala, Kai, Kaewphan, Suwisa, Mehryary, Farrokh, Salakoski, Tapio, Ginter, Filip, Fang, Hai, Smithers, Ben, Oates, Matt, Gough, Julian, Törönen, Petri, Koskinen, Patrik, Holm, Liisa, Chen, Ching-Tai, Hsu, Wen-Lian, Bryson, Kevin, Cozzetto, Domenico, Minneci, Federico, Jones, David T., Chapman, Samuel, BKC, Dukka, Khan, Ishita K., Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Stern, Amos, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E., Hieta, Reija, Legge, Duncan, Lovering, Ruth C., Magrane, Michele, Melidoni, Anna N., Mutowo-Meullenet, Prudence, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, ElShal, Sarah, Tranchevent, Léon-Charles, Das, Sayoni, Dawson, Natalie L., Lee, David, Lees, Jonathan G., Sillitoe, Ian, Bhat, Prajwal, Nepusz, Tamás, Romero, Alfonso E., Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Gillis, Jesse, Sedeño-Cortés, Adriana E., Pavlidis, Paul, Feng, Shou, Cejuela, Juan M., Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Gabaldon, Toni, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Ning, Wei, Zhou, Yuanpeng, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Toppo, Stefano, Ferrari, Carlo, Giollo, Manuel, Piovesan, Damiano, Tosatto, Silvio C.E., del Pozo, Angela, Fernández, José M., Maietta, Paolo, Valencia, Alfonso, Tress, Michael L., Benso, Alfredo, Di Carlo, Stefano, Politano, Gianfranco, Savino, Alessandro, Rehman, Hafeez Ur, Re, Matteo, Mesiti, Marco, Valentini, Giorgio, Bargsten, Joachim W., van Dijk, Aalt D. J., Gemovic, Branislava, Glisic, Sanja, Perovic, Vladmir, Veljkovic, Veljko, Veljkovic, Nevena, Almeida-e-Silva, Danillo C., Vencio, Ricardo Z. N., Sharan, Malvika, Vogel, Jörg, Kansakar, Lakesh, Zhang, Shanshan, Vucetic, Slobodan, Wang, Zheng, Sternberg, Michael J. E., Wass, Mark N., Huntley, Rachael P., Martin, Maria J., O’Donovan, Claire, Robinson, Peter N., Moreau, Yves, Tramontano, Anna, Babbitt, Patricia C., Brenner, Steven E., Linial, Michal, Orengo, Christine A., Rost, Burkhard, Greene, Casey S., Mooney, Sean D., Friedberg, Iddo, Radivojac, Predrag
Publicado no Genome Biol (2016)