Event extraction on PubMed scale

Por Ginter, Filip, Björne, Jari, Pyysalo, Sampo
Publicado em 2010

University of Turku in the BioNLP'11 Shared Task

Por Björne, Jari, Ginter, Filip, Salakoski, Tapio
Publicado em 2012

Dependency parsing of biomedical text with BERT

Por Kanerva, Jenna, Ginter, Filip, Pyysalo, Sampo
Publicado no BMC Bioinformatics (2020)

Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification

Por Mehryary, Farrokh, Kaewphan, Suwisa, Hakala, Kai, Ginter, Filip
Publicado no J Biomed Semantics (2016)

Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction

Por Mehryary, Farrokh, Björne, Jari, Salakoski, Tapio, Ginter, Filip
Publicado no Database (Oxford) (2018)

Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation

Por Järvinen Jouni, Boberg Jorma, Ginter Filip, Pahikkala Tapio, Salakoski Tapio
Publicado em 2005-06-01

Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation

Por Pahikkala, Tapio, Ginter, Filip, Boberg, Jorma, Järvinen, Jouni, Salakoski, Tapio
Publicado em 2005

Finding novel relationships with integrated gene-gene association network analysis of Synechocystis sp. PCC 6803 using species-independent text-mining

Por Kreula, Sanna M., Kaewphan, Suwisa, Ginter, Filip, Jones, Patrik R.
Publicado no PeerJ (2018)

Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling

Por Kaewphan, Suwisa, Hakala, Kai, Miekka, Niko, Salakoski, Tapio, Ginter, Filip
Publicado no Database (Oxford) (2018)

Complex event extraction at PubMed scale

Por Björne, Jari, Ginter, Filip, Pyysalo, Sampo, Tsujii, Jun'ichi, Salakoski, Tapio
Publicado em 2010

Comparative analysis of five protein-protein interaction corpora

Por Pyysalo, Sampo, Airola, Antti, Heimonen, Juho, Björne, Jari, Ginter, Filip, Salakoski, Tapio
Publicado em 2008

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

Por Airola, Antti, Pyysalo, Sampo, Björne, Jari, Pahikkala, Tapio, Ginter, Filip, Salakoski, Tapio
Publicado em 2008

Care episode retrieval: distributional semantic models for information retrieval in the clinical domain

Por Moen, Hans, Ginter, Filip, Marsi, Erwin, Peltonen, Laura-Maria, Salakoski, Tapio, Salanterä, Sanna
Publicado no BMC Med Inform Decis Mak (2015)

Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis

Por Hakala, Kai, Van Landeghem, Sofie, Salakoski, Tapio, Van de Peer, Yves, Ginter, Filip
Publicado no BMC Bioinformatics (2015)

BioInfer: a corpus for information extraction in the biomedical domain

Por Pyysalo, Sampo, Ginter, Filip, Heimonen, Juho, Björne, Jari, Boberg, Jorma, Järvinen, Jouni, Salakoski, Tapio
Publicado em 2007

Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations

Por Van Landeghem, Sofie, Hakala, Kai, Rönnqvist, Samuel, Salakoski, Tapio, Van de Peer, Yves, Ginter, Filip
Publicado em 2012

Cell line name recognition in support of the identification of synthetic lethality in cancer from text

Por Kaewphan, Suwisa, Van Landeghem, Sofie, Ohta, Tomoko, Van de Peer, Yves, Ginter, Filip, Pyysalo, Sampo
Publicado no Bioinformatics (2016)

Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods

Por Moen, Hans, Hakala, Kai, Peltonen, Laura-Maria, Suhonen, Henry, Ginter, Filip, Salakoski, Tapio, Salanterä, Sanna
Publicado no J Am Med Inform Assoc (2019)

Assisting nurses in care documentation: from automated sentence classification to coherent document structures with subject headings

Por Moen, Hans, Hakala, Kai, Peltonen, Laura-Maria, Matinolli, Hanna-Maria, Suhonen, Henry, Terho, Kirsi, Danielsson-Ojala, Riitta, Valta, Maija, Ginter, Filip, Salakoski, Tapio, Salanterä, Sanna
Publicado no J Biomed Semantics (2020)

Large-Scale Event Extraction from Literature with Multi-Level Gene Normalization

Por Van Landeghem, Sofie, Björne, Jari, Wei, Chih-Hsuan, Hakala, Kai, Pyysalo, Sampo, Ananiadou, Sophia, Kao, Hung-Yu, Lu, Zhiyong, Salakoski, Tapio, Van de Peer, Yves, Ginter, Filip
Publicado em 2013