Event extraction on PubMed scale

per Ginter, Filip, Björne, Jari, Pyysalo, Sampo
Publicat 2010

University of Turku in the BioNLP'11 Shared Task

per Björne, Jari, Ginter, Filip, Salakoski, Tapio
Publicat 2012

Dependency parsing of biomedical text with BERT

per Kanerva, Jenna, Ginter, Filip, Pyysalo, Sampo
Publicat a BMC Bioinformatics (2020)

Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification

per Mehryary, Farrokh, Kaewphan, Suwisa, Hakala, Kai, Ginter, Filip
Publicat a J Biomed Semantics (2016)

Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction

per Mehryary, Farrokh, Björne, Jari, Salakoski, Tapio, Ginter, Filip
Publicat a Database (Oxford) (2018)

Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation

per Järvinen Jouni, Boberg Jorma, Ginter Filip, Pahikkala Tapio, Salakoski Tapio
Publicat 2005-06-01

Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation

per Pahikkala, Tapio, Ginter, Filip, Boberg, Jorma, Järvinen, Jouni, Salakoski, Tapio
Publicat 2005

Finding novel relationships with integrated gene-gene association network analysis of Synechocystis sp. PCC 6803 using species-independent text-mining

per Kreula, Sanna M., Kaewphan, Suwisa, Ginter, Filip, Jones, Patrik R.
Publicat a PeerJ (2018)

Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling

per Kaewphan, Suwisa, Hakala, Kai, Miekka, Niko, Salakoski, Tapio, Ginter, Filip
Publicat a Database (Oxford) (2018)

Complex event extraction at PubMed scale

per Björne, Jari, Ginter, Filip, Pyysalo, Sampo, Tsujii, Jun'ichi, Salakoski, Tapio
Publicat 2010

Comparative analysis of five protein-protein interaction corpora

per Pyysalo, Sampo, Airola, Antti, Heimonen, Juho, Björne, Jari, Ginter, Filip, Salakoski, Tapio
Publicat 2008

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

per Airola, Antti, Pyysalo, Sampo, Björne, Jari, Pahikkala, Tapio, Ginter, Filip, Salakoski, Tapio
Publicat 2008

Care episode retrieval: distributional semantic models for information retrieval in the clinical domain

per Moen, Hans, Ginter, Filip, Marsi, Erwin, Peltonen, Laura-Maria, Salakoski, Tapio, Salanterä, Sanna
Publicat a BMC Med Inform Decis Mak (2015)

Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis

per Hakala, Kai, Van Landeghem, Sofie, Salakoski, Tapio, Van de Peer, Yves, Ginter, Filip
Publicat a BMC Bioinformatics (2015)

BioInfer: a corpus for information extraction in the biomedical domain

per Pyysalo, Sampo, Ginter, Filip, Heimonen, Juho, Björne, Jari, Boberg, Jorma, Järvinen, Jouni, Salakoski, Tapio
Publicat 2007

Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations

per Van Landeghem, Sofie, Hakala, Kai, Rönnqvist, Samuel, Salakoski, Tapio, Van de Peer, Yves, Ginter, Filip
Publicat 2012

Cell line name recognition in support of the identification of synthetic lethality in cancer from text

per Kaewphan, Suwisa, Van Landeghem, Sofie, Ohta, Tomoko, Van de Peer, Yves, Ginter, Filip, Pyysalo, Sampo
Publicat a Bioinformatics (2016)

Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods

per Moen, Hans, Hakala, Kai, Peltonen, Laura-Maria, Suhonen, Henry, Ginter, Filip, Salakoski, Tapio, Salanterä, Sanna
Publicat a J Am Med Inform Assoc (2019)

Assisting nurses in care documentation: from automated sentence classification to coherent document structures with subject headings

per Moen, Hans, Hakala, Kai, Peltonen, Laura-Maria, Matinolli, Hanna-Maria, Suhonen, Henry, Terho, Kirsi, Danielsson-Ojala, Riitta, Valta, Maija, Ginter, Filip, Salakoski, Tapio, Salanterä, Sanna
Publicat a J Biomed Semantics (2020)

Large-Scale Event Extraction from Literature with Multi-Level Gene Normalization

per Van Landeghem, Sofie, Björne, Jari, Wei, Chih-Hsuan, Hakala, Kai, Pyysalo, Sampo, Ananiadou, Sophia, Kao, Hung-Yu, Lu, Zhiyong, Salakoski, Tapio, Van de Peer, Yves, Ginter, Filip
Publicat 2013