M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species

Tekijä Messeguer Xavier, Treangen Todd J
Julkaistu 2006-10-01

M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species

Tekijä Treangen, Todd J, Messeguer, Xavier
Julkaistu 2006

You can't always sequence your way out of a tight spot: Next‐generation sequencing holds great promise for pathogen detection, but the devil is in the details

Tekijä Treangen, Todd J, Pop, Mihai
Julkaisussa EMBO Rep (2018)

Repetitive DNA and next-generation sequencing: computational challenges and solutions

Tekijä Treangen, Todd J., Salzberg, Steven L.
Julkaistu 2011

Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone

Tekijä Treangen, Todd J, Phillippy, Adam M
Julkaistu 2012

Horizontal Transfer, Not Duplication, Drives the Expansion of Protein Families in Prokaryotes

Tekijä Treangen, Todd J., Rocha, Eduardo P. C.
Julkaistu 2011

Bambus 2: scaffolding metagenomes

Tekijä Koren, Sergey, Treangen, Todd J., Pop, Mihai
Julkaistu 2011

Traumatic Brain Injury in Mice Induces Acute Bacterial Dysbiosis Within the Fecal Microbiome

Tekijä Treangen, Todd J., Wagner, Justin, Burns, Mark P., Villapol, Sonia
Julkaisussa Front Immunol (2018)

The impact of the neisserial DNA uptake sequences on genome evolution and stability

Tekijä Treangen, Todd J, Ambur, Ole Herman, Tonjum, Tone, Rocha, Eduardo PC
Julkaistu 2008

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

Tekijä Treangen, Todd J, Ondov, Brian D, Koren, Sergey, Phillippy, Adam M
Julkaisussa Genome Biol (2014)

Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers

Tekijä Davison, Michelle, Treangen, Todd J., Koren, Sergey, Pop, Mihai, Bhaya, Devaki
Julkaisussa PLoS One (2016)

RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification

Tekijä Nasko, Daniel J., Koren, Sergey, Phillippy, Adam M., Treangen, Todd J.
Julkaisussa Genome Biol (2018)

Next Generation Sequence Assembly with AMOS

Tekijä Treangen, Todd J, Sommer, Dan D, Angly, Florent E, Koren, Sergey, Pop, Mihai
Julkaistu 2011

MetAMOS: a metagenomic assembly and analysis pipeline for AMOS

Tekijä Treangen, Todd J, Koren, Sergey, Astrovskaya, Irina, Sommer, Dan, Liu, Bo, Pop, Mihai
Julkaistu 2011

Automated ensemble assembly and validation of microbial genomes

Tekijä Koren, Sergey, Treangen, Todd J, Hill, Christopher M, Pop, Mihai, Phillippy, Adam M
Julkaistu 2014

Identification and Genomic Analysis of a Novel Group C Orthobunyavirus Isolated from a Mosquito Captured near Iquitos, Peru

Tekijä Treangen, Todd J., Schoeler, George, Phillippy, Adam M., Bergman, Nicholas H., Turell, Michael J.
Julkaisussa PLoS Negl Trop Dis (2016)

PlasmidHawk improves lab of origin prediction of engineered plasmids using sequence alignment

Tekijä Wang, Qi, Kille, Bryce, Liu, Tian Rui, Elworth, R. A. Leo, Treangen, Todd J.
Julkaisussa Nat Commun (2021)

Accelerating SARS-CoV-2 low frequency variant calling on ultra deep sequencing datasets

Tekijä Kille, Bryce, Liu, Yunxi, Sapoval, Nicolae, Nute, Michael, Rauchwerger, Lawrence, Amato, Nancy, Treangen, Todd J.
Julkaisussa ArXiv (2021)

Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes

Tekijä Olson, Nathan D, Treangen, Todd J, Hill, Christopher M, Cepeda-Espinoza, Victoria, Ghurye, Jay, Koren, Sergey, Pop, Mihai
Julkaisussa Brief Bioinform (2017)

Mash: fast genome and metagenome distance estimation using MinHash

Tekijä Ondov, Brian D., Treangen, Todd J., Melsted, Páll, Mallonee, Adam B., Bergman, Nicholas H., Koren, Sergey, Phillippy, Adam M.
Julkaisussa Genome Biol (2016)